| Sequence ID | pao.1398 |
|---|---|
| Location | 2,614,764 – 2,614,877 |
| Length | 113 |
| Max. P | 0.531617 |
| Location | 2,614,764 – 2,614,877 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.70 |
| Mean single sequence MFE | -41.11 |
| Consensus MFE | -27.42 |
| Energy contribution | -28.76 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1398 2614764 113 + 6264404 A--GAGGGAUCGCCAAGG-----ACAGGUUCUGCGCCGUUUUCCCUGUCAUGCCUGUGAUCCAGCAAGGGACUGCGAUGAUCAGGGCAUCCCCCCGAUGCAUUGCUCCCCCACCAUUGCA .--...(((((((....(-----(((((....((...))....))))))......))))))).(((((((...(((((((((.(((.....))).))).))))))...)))....)))). ( -41.20) >pau.1634 3507812 112 - 6537648 A--GAGGGAUCGCCAAGG-----ACAGGUUCUGCGCCGUUUUCCCUGUCAUGCCUGUGAUCCAGCAAGGGACUGCGAUGAUCAGGGCAU-CCCCCGAUGCAUUGCGCCCCCACCAUUGCA .--...(((((((....(-----(((((....((...))....))))))......))))))).(((((((..((((((((((.(((...-.))).))).)))))))..)))....)))). ( -42.40) >pfo.1999 3885564 112 + 6438405 GAGGAAGGUUUGUCAAAGGAACGACAGGUCAUCUGCCA----CCCUUUCUAACCUGUGGUCCAGCAAGGGAAAGCGAUGAACGGGCC---UCCCCGAUGCAUUGCGCCCGC-UCAUCGCA ..(((.(..(((((........)))))..).)))....----(((((.((.(((...)))..)).)))))...(((((((.((((((---.............).))))).-))))))). ( -39.72) >consensus A__GAGGGAUCGCCAAGG_____ACAGGUUCUGCGCCGUUUUCCCUGUCAUGCCUGUGAUCCAGCAAGGGACUGCGAUGAUCAGGGCAU_CCCCCGAUGCAUUGCGCCCCCACCAUUGCA ......(((((((..(((.....(((((...............)))))....)))))))))).(((((((...(((((((((.(((.....))).))).)))))).)))......)))). (-27.42 = -28.76 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:17:45 2007