| Sequence ID | pao.2852 |
|---|---|
| Location | 5,387,755 – 5,387,859 |
| Length | 104 |
| Max. P | 0.999985 |
| Location | 5,387,755 – 5,387,859 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 90.16 |
| Mean single sequence MFE | -54.60 |
| Consensus MFE | -51.04 |
| Energy contribution | -51.24 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.17 |
| Structure conservation index | 0.93 |
| SVM decision value | 5.09 |
| SVM RNA-class probability | 0.999973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2852 5387755 104 + 6264404 GGAGAAUUGGCGGAAGGCAGUGGGAGUCGAACCCACCCAGGAACGGCUGCCGUCCCCCACCGGAUUUGAAGUCCGGCCACGCCACCGGGCGUGAUUGCCUUCCU ...........((((((((((((.(((((..((......))..))))).))........((((((.....)))))).((((((....)))))))))))))))). ( -47.80) >pau.2991 5658395 104 + 6537648 GGAGAAUUGGCGGAAGGCAGUGGGAGUCGAACCCACCCAGGAACGGCUGCCGUCCCCCACCGGAUUUGAAGUCCGGCCACGCCACCGGGCGUGAUUGCCUUCCU ...........((((((((((((.(((((..((......))..))))).))........((((((.....)))))).((((((....)))))))))))))))). ( -47.80) >pfo.1587 3319209 104 - 6438405 GGGAAAUUGGCGGAAGGCAGCCGGAGUCGAACCUGCCCGGGAACGGAUGCCGUCCCCAACCGGGUUUGAAGCCCGGCCGCGCCACCGGGCGCGAUUGCCUUCCU ...........(((((((((((((..(((((((((...(((.((((...)))).)))...)))))))))...)))))((((((....))))))..)))))))). ( -59.20) >pel.276 5302832 101 - 5888780 ---AAAUUGGCGGAAGGCAGCGGGAGUCGAACCUGCCCGGGAACGGCUGCCGUCCCCAACCGGGUUUGAAGCCCGGCCGCGCCACCGGGCGCGAUUGCCUUCCU ---........(((((((((((((..(((((((((...(((.((((...)))).)))...)))))))))..))))..((((((....)))))).))))))))). ( -59.10) >ppk.281 5597706 97 - 6181863 -------UGGCGGAAGGCAGCGGGAGUCGAACCUGCCCGGGAACGGCUGCCGUCCCCAACCGGGUUUGAAGCCCGGCCGCGCCACCGGGCGCGAUUGCCUUCCU -------....(((((((((((((..(((((((((...(((.((((...)))).)))...)))))))))..))))..((((((....)))))).))))))))). ( -59.10) >consensus GG_AAAUUGGCGGAAGGCAGCGGGAGUCGAACCUGCCCGGGAACGGCUGCCGUCCCCAACCGGGUUUGAAGCCCGGCCGCGCCACCGGGCGCGAUUGCCUUCCU ...........(((((((((((((..(((((((((...(((.((((...)))).)))...)))))))))..))))..((((((....)))))).))))))))). (-51.04 = -51.24 + 0.20)
| Location | 5,387,755 – 5,387,859 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 90.16 |
| Mean single sequence MFE | -55.78 |
| Consensus MFE | -53.06 |
| Energy contribution | -51.82 |
| Covariance contribution | -1.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.28 |
| Structure conservation index | 0.95 |
| SVM decision value | 5.39 |
| SVM RNA-class probability | 0.999985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2852 5387755 104 - 6264404 AGGAAGGCAAUCACGCCCGGUGGCGUGGCCGGACUUCAAAUCCGGUGGGGGACGGCAGCCGUUCCUGGGUGGGUUCGACUCCCACUGCCUUCCGCCAAUUCUCC .(((((((...((((((....))))))((((((.......)))))).((((((((...)))))))).((((((.......)))))))))))))........... ( -52.50) >pau.2991 5658395 104 - 6537648 AGGAAGGCAAUCACGCCCGGUGGCGUGGCCGGACUUCAAAUCCGGUGGGGGACGGCAGCCGUUCCUGGGUGGGUUCGACUCCCACUGCCUUCCGCCAAUUCUCC .(((((((...((((((....))))))((((((.......)))))).((((((((...)))))))).((((((.......)))))))))))))........... ( -52.50) >pfo.1587 3319209 104 + 6438405 AGGAAGGCAAUCGCGCCCGGUGGCGCGGCCGGGCUUCAAACCCGGUUGGGGACGGCAUCCGUUCCCGGGCAGGUUCGACUCCGGCUGCCUUCCGCCAAUUUCCC .((((((((..((((((....))))))((((((..((.((((.(.((((((((((...)))))))))).).)))).)).))))))))))))))........... ( -59.90) >pel.276 5302832 101 + 5888780 AGGAAGGCAAUCGCGCCCGGUGGCGCGGCCGGGCUUCAAACCCGGUUGGGGACGGCAGCCGUUCCCGGGCAGGUUCGACUCCCGCUGCCUUCCGCCAAUUU--- .((((((((.(((((((....))))))).((((..((.((((.(.((((((((((...)))))))))).).)))).))..)))).))))))))........--- ( -57.00) >ppk.281 5597706 97 + 6181863 AGGAAGGCAAUCGCGCCCGGUGGCGCGGCCGGGCUUCAAACCCGGUUGGGGACGGCAGCCGUUCCCGGGCAGGUUCGACUCCCGCUGCCUUCCGCCA------- .((((((((.(((((((....))))))).((((..((.((((.(.((((((((((...)))))))))).).)))).))..)))).))))))))....------- ( -57.00) >consensus AGGAAGGCAAUCGCGCCCGGUGGCGCGGCCGGGCUUCAAACCCGGUUGGGGACGGCAGCCGUUCCCGGGCAGGUUCGACUCCCGCUGCCUUCCGCCAAUUC_CC .((((((((..((((((....))))))((((((.......)))))).((((((((...))))))))(((.((......)))))..))))))))........... (-53.06 = -51.82 + -1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:17:32 2007