Locus 197

Sequence ID pao.1865
Location 3,509,166 – 3,509,272
Length 106
Max. P 0.945216
window782

overview

Window 2

Location 3,509,166 – 3,509,272
Length 106
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 65.66
Mean single sequence MFE -33.05
Consensus MFE -19.08
Energy contribution -18.38
Covariance contribution -0.69
Combinations/Pair 1.22
Mean z-score -1.74
Structure conservation index 0.58
SVM decision value 1.35
SVM RNA-class probability 0.945216
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1865 3509166 106 - 6264404
UUCUCAAGGC----UCUUGAAAUACUUCCGACGAUCCCUAUCUAGUUCGUGCGGGAUGCCGAAGACGGGUUCCGCAUCA--GAGU-ACUUGCUGA--UAAUUCAGGAGAUUCGCA
.(((((((((----(((.((..........((((............))))(((((((.(((....)))))))))).)))--))))-.))).((((--....))))))))...... ( -30.80)
>pau.1131 4478529 104 + 6537648
UUCUCAAGGC----UCUUGAAAUACUUCCGAUGAUCCCUAUCUAGUUCGUGCGGGAUGCCGAAGACGGGUUCCGCACCA--GAGU-ACUUGCUGA--UAAUUCAGGAGAUUCG--
.(((((((((----(((............((((.....))))......(((((((((.(((....)))))))))))).)--))))-.))).((((--....))))))))....-- ( -32.00)
>pfo.1083 4290492 107 + 6438405
UCUUCAAACG-AUCUCUUGAAAACAAAACGCAGGUCCCUAUCUAAGGGUUACGCGAUGCCGAAUUCGGGUCGCGGAGACAAAAAA-ACUUGCUGAUUGUUUUCAGGAGA------
..........-.((((((((((((((...((((((((((.....))))...((((((.(((....)))))))))...........-))))))...))))))))))))))------ ( -42.80)
>pf5.1237 4791424 103 + 7074893
UUUUUAAGGC-AUGUCUUGAAACGCUGGAGCCCAUCCCUAUCUCUUGGGUACGCGAUGCCGAAUUCGGGUCGCGGAGAU--AACC-ACUCGCUGA--AUAAUCAGGAGA------
.((((((((.-...))))))))...(((.(((((...........))))).((((((.(((....))))))))).....--..))-)(((.((((--....))))))).------ ( -34.00)
>ppk.1138 3936108 102 + 6181863
UUUUUCUAUUUAUCCCUUGAAAGCAUUUCCCUCGGCCAUAUCUUUUGAGUACGCGAUGCCGAAGCCGGGUCGCGUAAUG--ACUU-ACUUGCUGA--AU-CUCAGGAG-------
............(((...((.((((.....(((((.........)))))((((((((.(((....)))))))))))...--....-...))))..--.)-)...))).------- ( -24.10)
>pel.908 4176072 102 + 5888780
UUUUUCUGCC-GCCCCUUGAAAGCCCGUGGCCCGGCCAUAUCUCUUGAGUACGCGAUGCCGAAGUCGGGUCGCGUAGUG--ACUUAACUUGCUGA--AU-CUCAGGAG-------
.......(((-(..((.((......)).))..)))).....((((((((((((((((.(((....)))))))))))(..--(......)..)...--..-))))))))------- ( -34.60)
>consensus
UUUUCAAGGC_AUCUCUUGAAAGCCUUCCGCCCAUCCCUAUCUAUUGAGUACGCGAUGCCGAAGUCGGGUCGCGCAGAA__AAGU_ACUUGCUGA__AUAUUCAGGAGA______
.................................................((((((((.(((....)))))))))))...........(((.((((......)))))))....... (-19.08 = -18.38 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:17:23 2007