Locus 195

Sequence ID pao.1891
Location 3,564,361 – 3,564,444
Length 83
Max. P 0.988899
window779 window780

overview

Window 9

Location 3,564,361 – 3,564,444
Length 83
Sequences 3
Columns 83
Reading direction forward
Mean pairwise identity 73.28
Mean single sequence MFE -21.77
Consensus MFE -13.67
Energy contribution -17.00
Covariance contribution 3.33
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.63
SVM decision value 2.14
SVM RNA-class probability 0.988899
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1891 3564361 83 + 6264404
UUUUUGCAUAUUUUUCCCACUGAGUGGGAAAGUGGUUUCAUUUUCCGGGAAAUCGCCUUCACCCUGUGGGUCAAGGAGUUCCC
.....((....(((((((((...)))))))))..))..........(((((....((((.((((...)))).))))..))))) ( -26.80)
>pau.1107 4528058 81 - 6537648
UUUUUACAUAUUUUUCCCACUGAGUGGGAAAGUGGUUUCAUUUUCCGGGAAAUCGCCUUCACCCUGUGGGUCAAGGAGUUC--
............((((((.(.....)((((((((....))))))))))))))...((((.((((...)))).)))).....-- ( -24.60)
>pf5.213 402409 66 + 7074893
UUUUUGCAGCCUUUUCCCACUGCCUGGGAAUCUGAUUUCAUUUGCCGGGAAACUCCAUGCACCAUG-----------------
....((((....((((((...((....(((......)))....)).)))))).....)))).....----------------- ( -13.90)
>consensus
UUUUUGCAUAUUUUUCCCACUGAGUGGGAAAGUGGUUUCAUUUUCCGGGAAAUCGCCUUCACCCUGUGGGUCAAGGAGUUC__
............((((((.(.....)((((((((....))))))))))))))...((((.(((.....))).))))....... (-13.67 = -17.00 +   3.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 3,564,361 – 3,564,444
Length 83
Sequences 3
Columns 83
Reading direction reverse
Mean pairwise identity 73.28
Mean single sequence MFE -21.83
Consensus MFE -10.48
Energy contribution -12.37
Covariance contribution 1.89
Combinations/Pair 1.06
Mean z-score -2.57
Structure conservation index 0.48
SVM decision value 0.80
SVM RNA-class probability 0.853452
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1891 3564361 83 - 6264404
GGGAACUCCUUGACCCACAGGGUGAAGGCGAUUUCCCGGAAAAUGAAACCACUUUCCCACUCAGUGGGAAAAAUAUGCAAAAA
((((((.((((.((((...)))).)))).)..)))))...............((((((((...))))))))............ ( -27.90)
>pau.1107 4528058 81 + 6537648
--GAACUCCUUGACCCACAGGGUGAAGGCGAUUUCCCGGAAAAUGAAACCACUUUCCCACUCAGUGGGAAAAAUAUGUAAAAA
--...........(((((.(((((..((.(....)))(((((.((....)).)))))))))).)))))............... ( -22.20)
>pf5.213 402409 66 - 7074893
-----------------CAUGGUGCAUGGAGUUUCCCGGCAAAUGAAAUCAGAUUCCCAGGCAGUGGGAAAAGGCUGCAAAAA
-----------------(((..(((.(((......)))))).)))....(((.((((((.....))))))....)))...... ( -15.40)
>consensus
__GAACUCCUUGACCCACAGGGUGAAGGCGAUUUCCCGGAAAAUGAAACCACUUUCCCACUCAGUGGGAAAAAUAUGCAAAAA
.......((((.(((.....))).))))...((((((.((....(((......)))....))...))))))............ (-10.48 = -12.37 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:17:21 2007