Locus 193

Sequence ID pao.1351
Location 2,500,397 – 2,500,448
Length 51
Max. P 0.900733
window771 window772

overview

Window 1

Location 2,500,397 – 2,500,448
Length 51
Sequences 3
Columns 51
Reading direction forward
Mean pairwise identity 88.89
Mean single sequence MFE -22.83
Consensus MFE -21.40
Energy contribution -21.40
Covariance contribution 0.00
Combinations/Pair 1.12
Mean z-score -6.93
Structure conservation index 0.94
SVM decision value 1.02
SVM RNA-class probability 0.900733
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1351 2500397 51 + 6264404
ACAUACGCUGCGUAUGUCAAAAAUCAUGGAGACAUACGCAGCGUAUGUCAA
((((((((((((((((((............))))))))))))))))))... ( -30.40)
>pau.1677 3405098 51 - 6537648
ACAUACGCAGCGUAUGUCAAAAAUCAUGGAGACAUACGCAGCGUAUGUCAA
((((((((.(((((((((............))))))))).))))))))... ( -25.10)
>pf5.2498 4759672 51 + 7074893
ACAUACGCCUCGUAUGUUAAAAAUCAUGUAAAUAUACGCCUCGUAUGUCAA
(((((((...((((((((............))))))))...)))))))... ( -13.00)
>consensus
ACAUACGCAGCGUAUGUCAAAAAUCAUGGAGACAUACGCAGCGUAUGUCAA
((((((((.(((((((((............))))))))).))))))))... (-21.40 = -21.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 2,500,397 – 2,500,448
Length 51
Sequences 3
Columns 51
Reading direction reverse
Mean pairwise identity 88.89
Mean single sequence MFE -23.17
Consensus MFE -21.01
Energy contribution -21.57
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -6.14
Structure conservation index 0.91
SVM decision value 0.94
SVM RNA-class probability 0.885662
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1351 2500397 51 - 6264404
UUGACAUACGCUGCGUAUGUCUCCAUGAUUUUUGACAUACGCAGCGUAUGU
...((((((((((((((((((............)))))))))))))))))) ( -31.20)
>pau.1677 3405098 51 + 6537648
UUGACAUACGCUGCGUAUGUCUCCAUGAUUUUUGACAUACGCUGCGUAUGU
...((((((((.(((((((((............))))))))).)))))))) ( -26.60)
>pf5.2498 4759672 51 - 7074893
UUGACAUACGAGGCGUAUAUUUACAUGAUUUUUAACAUACGAGGCGUAUGU
...(((((((...(((((.((............)).)))))...))))))) ( -11.70)
>consensus
UUGACAUACGCUGCGUAUGUCUCCAUGAUUUUUGACAUACGCAGCGUAUGU
...((((((((.(((((((((............))))))))).)))))))) (-21.01 = -21.57 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:17:12 2007