| Sequence ID | pao.1241 |
|---|---|
| Location | 2,247,158 – 2,247,272 |
| Length | 114 |
| Max. P | 0.764448 |
| Location | 2,247,158 – 2,247,272 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 68.34 |
| Mean single sequence MFE | -29.07 |
| Consensus MFE | -14.50 |
| Energy contribution | -17.73 |
| Covariance contribution | 3.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1241 2247158 114 - 6264404 GGAAACAUCCAACUAUAGACCAGACCAAUGACUGGAAUAAUAAACCGGUCUUGGACCCUAUGGCUCAAUCCGCGCAUCCUGGCCCCACCAUUCGACGGCCAGGAGCCCAGCGCC (((....)))..((((((......((((.((((((.........))))))))))...))))))........((((.((((((((............)))))))).....)))). ( -38.20) >pau.1783 3150610 110 + 6537648 --AAACAUCCAACUAUAGGCCAGACCAAUGAUUGGAAUAAUAAACCGGUCUUGGACCCUAUGGCUCAAUCCGCGCAUCCUGGCCCCACCAUUCGACGGCCAGGAGCCCAGCG-- --..........(((((((.....((((.((((((.........))))))))))..))))))).......(((((.((((((((............))))))))))...)))-- ( -35.10) >pf5.889 1678782 83 - 7074893 -------UCCAACUAUAGGCUGUACUUAUGGAAAGCAUAAUAAGCCGGUCUUGGACGCUAUAGCUGAAAACUUCCAUCCUUGCCCCAUCA------------------------ -------(((((.....((((....(((((.....)))))..))))....))))).((....))..........................------------------------ ( -13.90) >consensus __AAACAUCCAACUAUAGGCCAGACCAAUGAAUGGAAUAAUAAACCGGUCUUGGACCCUAUGGCUCAAUCCGCGCAUCCUGGCCCCACCAUUCGACGGCCAGGAGCCCAGCG__ ............((((((......((((.((((((.........))))))))))...)))))).............((((((((............)))))))).......... (-14.50 = -17.73 + 3.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:17:11 2007