| Sequence ID | pao.2046 |
|---|---|
| Location | 3,832,754 – 3,832,848 |
| Length | 94 |
| Max. P | 0.536538 |
| Location | 3,832,754 – 3,832,848 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 50.26 |
| Mean single sequence MFE | -32.50 |
| Consensus MFE | -11.06 |
| Energy contribution | -15.75 |
| Covariance contribution | 4.69 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536538 |
| Prediction | RNA |
| WARNING | Mean pairwise identity too low. |
Download alignment: ClustalW | MAF
>pao.2046 3832754 94 - 6264404 GCGGAACAGUGCCG-----CGCUGUCAUCCAUGCACUGGAUGACGGCGUAUCCAUCCUGCAUAUGGCGUUCGCCGAGGCGCUUUCCAGGGCCCCUGUUC ..((((.(((((((-----((((((((((((.....)))))))))))))..............((((....)))).))))))))))(((...))).... ( -43.60) >pau.934 4831130 94 + 6537648 GCGGAACAGUGCCG-----CGCCGUCAUCCAUGCACUGGAUGACGGCGUAUCCAUCCUGCAUAUGGCGUUCGCCGAGGCGCUUUCCAGGGCCCCUGUUC ..((((.(((((((-----((((((((((((.....)))))))))))))..............((((....)))).))))))))))(((...))).... ( -45.80) >pfo.506 5388659 75 + 6438405 CACCGGGGUGGUCAUUAUCCGCUG-CGU---------UGAUAGUGGUCCAUCCAGCCUGUUCAUGG--------UGGGCGC------AAACCCUUGUCG .....((((((((((((((.((..-.))---------.)))))))).)))))).(((..(.....)--------..)))((------((....)))).. ( -25.10) >pf5.568 5973483 79 + 7074893 CCCC-----GGUCAU--CCCCCUG-CAUCGACGCCCCUGAUAAGCCUGCAUCCAGCCGCUGGAUAAC---CCCUUGAACG---------GCCCUGAUGG ....-----((....--)).....-(((((..(((.....((((.....((((((...))))))...---..))))...)---------))..))))). ( -15.50) >consensus CCCCAACAGGGCCA_____CGCUG_CAUCCAUGCACUGGAUAACGGCGCAUCCAGCCUGCAUAUGGC___CGCCGAGGCGC______GGGCCCCUGUUC ...((((((((((......((((((((((((.....))))))))))))..........((...((((....))))..)).........)).)))))))) (-11.06 = -15.75 + 4.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:17:09 2007