Locus 189

Sequence ID	pao.1193
Location	2,164,928 – 2,165,027
Length	99
Max. P	0.678560

overview

Window 6

Location	2,164,928 – 2,165,027
Length	99
Sequences	3
Columns	103
Reading direction	forward
Mean pairwise identity	78.88
Mean single sequence MFE	-48.85
Consensus MFE	-30.13
Energy contribution	-30.37
Covariance contribution	0.23
Combinations/Pair	1.24
Mean z-score	-1.85
Structure conservation index	0.62
SVM decision value	0.30
SVM RNA-class probability	0.678560
Prediction	RNA

Download alignment: ClustalW | MAF

>pao.1193 2164928 99 + 6264404
GGCGGCGCCCGCA-AGGGCGGCUG--GAGGCGGGUGGCCGCGCA-AAAGUAGCGGCCCGGCAGUACCAAGGUAGUAGCACGCCGUGGCUCCGCGCGUCCUAGC
.(((.(((((...-.))))).).(--((.(((.(..(((((((.-......))(((...(((.(((....))).).))..))))))))..).))).)))..)) ( -52.70)
>pau.1832 3068385 97 - 6537648
GGCGGCGCCCGCA-AGGGCGGCUG--GAGGCGGGUGGCCGCGCA-AAAGUAGCGGCCCGGCAGUACCAAGGUAGUAGCACGCCGUGGCUCCGCGCGUCCUA--
...(.(((((...-.))))).).(--((.(((.(..(((((((.-......))(((...(((.(((....))).).))..))))))))..).))).)))..-- ( -52.00)
>pf5.1337 2470531 101 + 7074893
GGUGGCGCCAGCAUAGGAAGAGUACCGUGGCGGGGAAAUAUGCAGAAAGUAGCGCCCGGGCAGUACCAAGGUAGUAGCCCGGCGCGGGUGCGGCGGUCUUA--
.((.(((((.(((((.........(((...))).....)))))........(((((.(((((.(((....))).).))))))))).))))).)).......-- ( -41.84)
>consensus
GGCGGCGCCCGCA_AGGGCGGCUG__GAGGCGGGUGGCCGCGCA_AAAGUAGCGGCCCGGCAGUACCAAGGUAGUAGCACGCCGUGGCUCCGCGCGUCCUA__
.((((.(((......(.((((((............)))))).)........(((((...(((.(((....))).).))..)))))))).)))).......... (-30.13 = -30.37 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:17:06 2007