| Sequence ID | pao.2113 |
|---|---|
| Location | 3,958,896 – 3,958,976 |
| Length | 80 |
| Max. P | 0.587950 |
| Location | 3,958,896 – 3,958,976 |
|---|---|
| Length | 80 |
| Sequences | 6 |
| Columns | 83 |
| Reading direction | reverse |
| Mean pairwise identity | 81.21 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -15.48 |
| Energy contribution | -16.48 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2113 3958896 80 - 6264404 GAAAACGGGACUGGACCUGCGGCGGGA-CCGCAA-CGUGC-GGGAAAAUAGGGGAAGGCGCGAUCUUAUAAGGAAAUGUCGCG .....((.(((....(((((((.....-))))..-(((((-................)))))........)))....))).)) ( -21.09) >pf5.2962 5605903 80 - 7074893 AACAACGGG-CUGGACCUGCGGCGAAAGCCGCAC-GGGGC-GACGAAAUAGGGGAAGGCGCGAUCUUAUAAUUAAAUGUCGCG ........(-((...((((((((....))))).(-(....-..)).....)))...)))(((((.(((....)))..))))). ( -28.40) >pss.2364 4642075 78 - 6093698 UAAAACGGG-CUAGACCUGCGGCGGAAGCCGCAC-GGGGC-GACGAAUAAGA--AAGGCGCGAUAGUAUAAAAAAAUGUCGCG .....((.(-((...((((((((....)))))).-)))))-..)).......--....(((((((...........))))))) ( -28.50) >pel.647 4620864 81 + 5888780 GACAACGGG-GGUGACCUGCGGCGUAAACCGCAC-GGGGCGGACGGAAUAGGGAAAGGCGCAAUACUAUAAUUAAAUGUCGCC ((((.((((-(....))).))((((...((((..-...)))).(......)......))))...............))))... ( -22.60) >ppk.607 4942707 81 + 6181863 GACAACGGG-GGUGACCUGCGGCGUAAGCCGCAC-GGGGCGGACGAAAUAGGGAAAGGCGCAAUACUAUAAGUAAAUGUCGCC (.(..((((-(....)))(((((....))))).)-)..))................((((((.(((.....)))..)).)))) ( -27.80) >pfo.2696 5100860 81 - 6438405 AACAACGGG-CGAGACCUGCGGCGUAAGCCGCACGGGGGC-GACGAAAUAGGGGAAGGCGCGAUAUUGACACUAAAUGUCGCG .....((..-((...((((((((....)))))).))...)-).)).............(((((((((.......))))))))) ( -31.70) >consensus GACAACGGG_CGAGACCUGCGGCGUAAGCCGCAC_GGGGC_GACGAAAUAGGGGAAGGCGCGAUAUUAUAAGUAAAUGUCGCG ......((.......))((((((....))))))..........................((((((...........)))))). (-15.48 = -16.48 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:17:03 2007