| Sequence ID | pao.2202 |
|---|---|
| Location | 4,133,758 – 4,133,819 |
| Length | 61 |
| Max. P | 0.999851 |
| Location | 4,133,758 – 4,133,819 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 51.82 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -18.00 |
| Energy contribution | -17.67 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.67 |
| SVM decision value | 4.25 |
| SVM RNA-class probability | 0.999851 |
| Prediction | RNA |
| WARNING | Mean pairwise identity too low. |
Download alignment: ClustalW | MAF
>pao.2202 4133758 61 + 6264404 AAGGCCCCACUGGCCUCCUCCAGCCCCACUCAGGUGGGGCUUUUUUCUGCCCGAG----------------------UGUUCC ..((...(((((((.......((((((((....)))))))).......)))..))----------------------))..)) ( -23.34) >pau.780 5113398 81 - 6537648 --GGCCCCACUGGCCUCCUCCAGCCCCACUCAGGUGGGGCUUUUUUCUGCCCUGGGAAAAGCACAAGCAGGCGAUGGCAUACC --.(((....(.((((.((..((((((((....))))))))(((((((.....))))))).....)).)))).).)))..... ( -29.50) >pf5.1879 3604970 62 + 7074893 ---------------------AGUCCCGCUGAUGCGGGGCUUUUUUUUGCCUUGGCAAAGGCCCAGGGGGGCAAUGCGAUACC ---------------------((((((((....))))))))...((((((....))))))((((....))))........... ( -27.70) >consensus __GGCCCCACUGGCCUCCUCCAGCCCCACUCAGGUGGGGCUUUUUUCUGCCCUGG_AAA_GC_CA_G__GGC_AUG_CAUACC ..((((.....))))......((((((((....)))))))).......................................... (-18.00 = -17.67 + -0.33)
| Location | 4,133,758 – 4,133,819 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 83 |
| Reading direction | reverse |
| Mean pairwise identity | 51.82 |
| Mean single sequence MFE | -28.78 |
| Consensus MFE | -15.94 |
| Energy contribution | -16.17 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.55 |
| SVM decision value | 4.22 |
| SVM RNA-class probability | 0.999841 |
| Prediction | RNA |
| WARNING | Mean pairwise identity too low. |
Download alignment: ClustalW | MAF
>pao.2202 4133758 61 - 6264404 GGAACA----------------------CUCGGGCAGAAAAAAGCCCCACCUGAGUGGGGCUGGAGGAGGCCAGUGGGGCCUU ((..((----------------------((..(((.......((((((((....)))))))).......)))))))...)).. ( -27.94) >pau.780 5113398 81 + 6537648 GGUAUGCCAUCGCCUGCUUGUGCUUUUCCCAGGGCAGAAAAAAGCCCCACCUGAGUGGGGCUGGAGGAGGCCAGUGGGGCC-- (((...((((.((((.(((.(((((......)))))......((((((((....)))))))).))).))))..)))).)))-- ( -35.90) >pf5.1879 3604970 62 - 7074893 GGUAUCGCAUUGCCCCCCUGGGCCUUUGCCAAGGCAAAAAAAAGCCCCGCAUCAGCGGGACU--------------------- ......((...((((....)))).(((((....))))).....))(((((....)))))...--------------------- ( -22.50) >consensus GGUAUA_CAU_GCC__C_UG_GC_UUU_CCAGGGCAGAAAAAAGCCCCACCUGAGUGGGGCUGGAGGAGGCCAGUGGGGCC__ ..........................................((((((((....))))))))......((((.....)))).. (-15.94 = -16.17 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:17:01 2007