| Sequence ID | pao.2627 |
|---|---|
| Location | 4,965,054 – 4,965,108 |
| Length | 54 |
| Max. P | 0.999923 |
| Location | 4,965,054 – 4,965,108 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 71.48 |
| Mean single sequence MFE | -19.58 |
| Consensus MFE | -11.02 |
| Energy contribution | -12.70 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.64 |
| Structure conservation index | 0.56 |
| SVM decision value | 4.58 |
| SVM RNA-class probability | 0.999923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2627 4965054 54 + 6264404 ACAU-AAAAAAACGCCCAGCUCC--GAAGAGGUGGGCG---UUU--UUCAGCAAGCGUCGAA ....-..(((((((((((.(((.--...))).))))))---)))--)).............. ( -21.10) >pau.2714 5128612 54 + 6537648 ACAU-AAAAAAACGCCCAGCUCC--GAAGAGGUGGGCG---UUU--UUCAGCAAGCGUCGAA ....-..(((((((((((.(((.--...))).))))))---)))--)).............. ( -21.10) >pst.2633 4992861 50 + 6397126 CCAU-AAAAAAACGCCCAACCCCGUGAGGAGGUGGACGUUCUUUC-UGGAAC---------- (((.-(((..((((.(((.((((....)).))))).)))).))).-)))...---------- ( -17.40) >psp.2400 4711199 52 + 5928787 CCAUAAAAAAAACGCCCAGCCCCGCGAGGGGAUGGACGUUCUUUCUUUGAAC---------- .((...(((.((((.(((.((((....)))).))).)))).)))...))...---------- ( -19.30) >pss.2491 4908628 51 + 6093698 CCAU-AAAAAAACGCCCAGCCCCGCGAGGGGAUGGACGUUCUUUCUUUGAAC---------- .((.-.(((.((((.(((.((((....)))).))).)))).)))...))...---------- ( -19.00) >consensus CCAU_AAAAAAACGCCCAGCCCCG_GAGGAGGUGGACGUUCUUUC_UUGAAC__________ ......(((.((((.(((.((((....)))).))).)))).))).................. (-11.02 = -12.70 + 1.68)
| Location | 4,965,054 – 4,965,108 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 71.48 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -19.58 |
| Energy contribution | -20.22 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.24 |
| Mean z-score | -4.88 |
| Structure conservation index | 0.79 |
| SVM decision value | 2.89 |
| SVM RNA-class probability | 0.997614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2627 4965054 54 - 6264404 UUCGACGCUUGCUGAA--AAA---CGCCCACCUCUUC--GGAGCUGGGCGUUUUUUU-AUGU ..........((.(((--(((---((((((.(((...--.))).)))))))))))).-..)) ( -24.40) >pau.2714 5128612 54 - 6537648 UUCGACGCUUGCUGAA--AAA---CGCCCACCUCUUC--GGAGCUGGGCGUUUUUUU-AUGU ..........((.(((--(((---((((((.(((...--.))).)))))))))))).-..)) ( -24.40) >pst.2633 4992861 50 - 6397126 ----------GUUCCA-GAAAGAACGUCCACCUCCUCACGGGGUUGGGCGUUUUUUU-AUGG ----------...(((-(((((((((((((.((((....)))).)))))))))))))-.))) ( -23.80) >psp.2400 4711199 52 - 5928787 ----------GUUCAAAGAAAGAACGUCCAUCCCCUCGCGGGGCUGGGCGUUUUUUUUAUGG ----------...((.((((((((((((((.((((....)))).)))))))))))))).)). ( -26.90) >pss.2491 4908628 51 - 6093698 ----------GUUCAAAGAAAGAACGUCCAUCCCCUCGCGGGGCUGGGCGUUUUUUU-AUGG ----------.......(((((((((((((.((((....)))).)))))))))))))-.... ( -25.00) >consensus __________GUUCAA_GAAAGAACGUCCACCUCCUC_CGGGGCUGGGCGUUUUUUU_AUGG .................(((((((((((((.((((....)))).)))))))))))))..... (-19.58 = -20.22 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:58 2007