| Sequence ID | pao.696 |
|---|---|
| Location | 1,232,092 – 1,232,185 |
| Length | 93 |
| Max. P | 0.745796 |
| Location | 1,232,092 – 1,232,185 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.58 |
| Mean single sequence MFE | -45.80 |
| Consensus MFE | -25.41 |
| Energy contribution | -26.20 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.696 1232092 93 + 6264404 GGAGCGUUUCCUCGUUGUUGUCUUGCUGCCGGCUCACG----CGCCGCCGGAGCGAA---ACGGGCGGG--------------------CGCGAGCCGUUGCUGACGGCAACGAUAUCCA (((........(((((((((((..((...((((((.((----(.(((((.(......---.).))))))--------------------)).))))))..)).)))))))))))..))). ( -49.50) >pau.2333 2119811 91 - 6537648 --AGCGUUUCCUCGUUGUUGUCUUGCUGCCGGCGCACG----CGCCGCCGGAGCGAA---ACGGGCGGG--------------------CGCGAGCCGUUGCUGACGGCAACGAUAUCCA --.........(((((((((((..((...((((...((----(((((((.(......---.).))).))--------------------)))).))))..)).)))))))))))...... ( -44.10) >pf5.2304 4403206 113 + 7074893 ------UCUCCUCAUUGUUGUUUUGCUGCCC-CGCGCGGCAACGCCGCCAGGGUGAACAAACCUGCGGGUCGACGCGCCAGGGAAGCGGCGCGGACCGCUGCUGGCCACCACGAUAUCCA ------.......(((((.((...((((.((-((((((((...)))))..((((......))))))))).))..))(((((...(((((......))))).))))).)).)))))..... ( -43.80) >consensus __AGCGUUUCCUCGUUGUUGUCUUGCUGCCGGCGCACG____CGCCGCCGGAGCGAA___ACGGGCGGG____________________CGCGAGCCGUUGCUGACGGCAACGAUAUCCA ...........(((((((((((..((.((...(((.((....))(((((.(..........).)))))......................)))....)).)).)))))))))))...... (-25.41 = -26.20 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:56 2007