| Sequence ID | pao.2487 |
|---|---|
| Location | 4,652,458 – 4,652,578 |
| Length | 120 |
| Max. P | 0.993447 |
| Location | 4,652,458 – 4,652,578 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.18 |
| Mean single sequence MFE | -26.25 |
| Consensus MFE | -17.20 |
| Energy contribution | -17.77 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.66 |
| SVM decision value | 2.40 |
| SVM RNA-class probability | 0.993447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2487 4652458 120 + 6264404 GGAUCUUCUCCAAAUGGGAAUGACUCUCUUUUCCAUUCAGGCUAUCACGCCACCAGAACAUUCCUCAAUGGGGAAUAGAUUCCUCAUUGCGAAAUAUGAAAUCUCCUACGCCCGUCCCUU ((((.((((...((((((((.(.....).))))))))..(((......)))...))))(((..(.((((((((((....)))))))))).)....)))...............))))... ( -27.90) >pau.473 5662254 118 - 6537648 --AUCUUCUCCAAAUGGGAAUGACUCUCUUUUCCAUUCAGGCUAUCACGCCACCAGAUCAUUCCUCAAUGGGGAAUACAUUCCUCAUUGCGAAAUAUGGAAUCUCCUACGCCCGUCCCUU --.............((((...........((((((...(((......))).........(((..((((((((((....)))))))))).)))..)))))).............)))).. ( -28.55) >pf5.2197 4181610 105 + 7074893 --------UCCAAGUGAGAAUGAUCCUCUUUCACGAUUAGGCUAUCACGCUGCCAUGAUAUUCCUCAAUACGGAAUACGUUCUGCA------AAU-UGGAAUGAUCUACACUUUUGGCCC --------.((((((((((.........))))))(((((..(((....((....(((.((((((.......)))))))))...)).------...-)))..))))).......))))... ( -22.30) >consensus __AUCUUCUCCAAAUGGGAAUGACUCUCUUUUCCAUUCAGGCUAUCACGCCACCAGAACAUUCCUCAAUGGGGAAUACAUUCCUCAUUGCGAAAUAUGGAAUCUCCUACGCCCGUCCCUU .............(((((.....................(((......))).(((....(((.(.((((((((((....)))))))))).).))).)))...........)))))..... (-17.20 = -17.77 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:52 2007