| Sequence ID | pao.3094 |
|---|---|
| Location | 5,856,419 – 5,856,531 |
| Length | 112 |
| Max. P | 0.753918 |
| Location | 5,856,419 – 5,856,531 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 68.38 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -11.79 |
| Energy contribution | -11.60 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.3094 5856419 112 + 6264404 ACCGGCCCCAGGACGAAGCGAAAACGC--AUUUACGUCCUC---CCUCUUGUAGACCGCUCGGUCCACCCUCAUAUUGGGGCGACCGAUCUGGGACGCGAUCACAAGGAAUCCCGAC ..(((....((((((..(((....)))--.....)))))).---..((((((.((.(((((((((..(((.......)))..))))))........))).))))))))....))).. ( -37.20) >pst.203 6041405 75 - 6397126 -----------AACCAGGCGACCACGCCAGUUCCUUUCUUC---ACCCUUGUAGACCGUCAAGUCCACCCCAAUAUCGGGGCGACCGAU---------------------------- -----------.....((((....))))........(((.(---(....)).)))..(((..(((..((((......)))).))).)))---------------------------- ( -16.50) >pfo.135 6134022 73 - 6438405 -----------AACCAGGCGAAAACGCCAGUUUCAA-CUUC---ACCCUUGUAGACCGUCCUGCCCACCCCCAUAUUGGGGCGACUGA----------------------------- -----------.....((((....))))((((....-....---......((((......))))....((((.....)))).))))..----------------------------- ( -17.20) >pf5.164 6755046 73 - 7074893 -----------AACCAGGCGAAAACGCCAGUUUUAA-CUUC---ACCCUUGUAGACCGUCCUGCCCACCCCCAUAUUGGGGCGACUGA----------------------------- -----------.....((((....))))((((....-....---......((((......))))....((((.....)))).))))..----------------------------- ( -17.20) >ppk.140 5883767 77 - 6181863 -----------AACCAGGCGACAACGCCAGUUCCUUUCUUC-CUACCCUUGUAGACCGUUAUCUCUACCCCCAUAUUGGGGCGACUGAC---------------------------- -----------.....((((....))))((((.........-........(((((........)))))((((.....)))).))))...---------------------------- ( -18.10) >pel.116 5654813 78 - 5888780 -----------AACCAGGCGACAACGCCAGUUCCUUUCCCCACUACCCUUGUAGACCGUCACCUCUACCCCCAUAUUGGGGCGACUGAC---------------------------- -----------.....((((....)))).(((..((.(((((.((.....(((((........))))).....)).))))).))..)))---------------------------- ( -19.20) >consensus ___________AACCAGGCGAAAACGCCAGUUCCUUUCUUC___ACCCUUGUAGACCGUCAUGUCCACCCCCAUAUUGGGGCGACUGA_____________________________ ................((((....)))).....................................(.((((......)))).).................................. (-11.79 = -11.60 + -0.19)
| Location | 5,856,419 – 5,856,531 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 68.38 |
| Mean single sequence MFE | -28.45 |
| Consensus MFE | -17.86 |
| Energy contribution | -18.45 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.753918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.3094 5856419 112 - 6264404 GUCGGGAUUCCUUGUGAUCGCGUCCCAGAUCGGUCGCCCCAAUAUGAGGGUGGACCGAGCGGUCUACAAGAGG---GAGGACGUAAAU--GCGUUUUCGCUUCGUCCUGGGGCCGGU .(((((((..(((((((((((.((...))(((((((((((.....).)))).)))))))))))).)))))((.---((((((((....--)))))))).))..)))))))....... ( -46.60) >pst.203 6041405 75 + 6397126 ----------------------------AUCGGUCGCCCCGAUAUUGGGGUGGACUUGACGGUCUACAAGGGU---GAAGAAAGGAACUGGCGUGGUCGCCUGGUU----------- ----------------------------.((..((((((((....))..(((((((....)))))))..))))---)).))....((((((((....)))).))))----------- ( -24.70) >pfo.135 6134022 73 + 6438405 -----------------------------UCAGUCGCCCCAAUAUGGGGGUGGGCAGGACGGUCUACAAGGGU---GAAG-UUGAAACUGGCGUUUUCGCCUGGUU----------- -----------------------------(((.((.((((.....))))((((((......))))))..)).)---))..-....((((((((....)))).))))----------- ( -26.20) >pf5.164 6755046 73 + 7074893 -----------------------------UCAGUCGCCCCAAUAUGGGGGUGGGCAGGACGGUCUACAAGGGU---GAAG-UUAAAACUGGCGUUUUCGCCUGGUU----------- -----------------------------(((.((.((((.....))))((((((......))))))..)).)---))..-....((((((((....)))).))))----------- ( -26.20) >ppk.140 5883767 77 + 6181863 ----------------------------GUCAGUCGCCCCAAUAUGGGGGUAGAGAUAACGGUCUACAAGGGUAG-GAAGAAAGGAACUGGCGUUGUCGCCUGGUU----------- ----------------------------.((((.((((((......)))))...(((((((.(((((....))))-).((.......))..)))))))).))))..----------- ( -22.20) >pel.116 5654813 78 + 5888780 ----------------------------GUCAGUCGCCCCAAUAUGGGGGUAGAGGUGACGGUCUACAAGGGUAGUGGGGAAAGGAACUGGCGUUGUCGCCUGGUU----------- ----------------------------.....((.(((((.(((....((((((....)..)))))....))).)))))...))((((((((....)))).))))----------- ( -24.80) >consensus _____________________________UCAGUCGCCCCAAUAUGGGGGUGGACAGGACGGUCUACAAGGGU___GAAGAAAGAAACUGGCGUUGUCGCCUGGUU___________ ....................................((((.....))))((((((......))))))..................((((((((....)))).))))........... (-17.86 = -18.45 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:05:23 2007