| Sequence ID | pao.2604 |
|---|---|
| Location | 4,917,468 – 4,917,585 |
| Length | 117 |
| Max. P | 0.984598 |
| Location | 4,917,468 – 4,917,580 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 68.99 |
| Mean single sequence MFE | -38.00 |
| Consensus MFE | -27.85 |
| Energy contribution | -27.22 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.984598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2604 4917468 112 - 6264404 GCUGUCUUA-CGCGGCUCGCG--CGUCGAGUCGCAACCCGGCA-ACGCCGGCUUCAACAAAACCCGCCGGACUUCGAUCCGGCCGUUGGAA--ACCACUGUUUGGGAGAGUUACGACU ...(((...-.((((((((..--...))))))))((((((((.-..)))))...........(((((((((......)))))).((.(...--.).)).....)))...)))..))). ( -42.00) >pfo.2678 5078860 101 - 6438405 ACAGACUUC-CGCGGUUCGCU--CGACGAGCCGCAACC-GGCGCAGGCCGGAUUCGUUA-AACCCGCCGGGA-CUACACCGGCCGAUGAAA--ACCACAAUU-AGGAGAG-------- ......(((-(((((((((..--...))))))))..((-(((....))))).((((((.-.....(((((..-.....))))).)))))).--.........-.))))..-------- ( -39.60) >pel.2568 4773767 105 - 5888780 GCAUGACACACGGGGUUCGCUGAAGGCGGGCCCUGACC-GGCA-ACGCCGGACCGAAUC-AACCCGCCGGUGCUGACACCGGCCGAUGAAA--ACCACAAUUUGGGAGAG-------- ...(((....((((((((((.....)))))))))).((-(((.-..)))))......))-).((((((((((....))))))).(.((...--..))).....)))....-------- ( -44.30) >pf5.2946 5584407 100 - 7074893 ACAGACUUC-CGCGGCUCGCU--UGUCGAGCCGCACCC-GGCA-AAGCCGGAUUUGCU--AACCCGCCGGUAUCGACACCGGCCGUUGAAA--ACCACAAUU-AGGAGAG-------- ......(((-(((((((((..--...))))))))..((-(((.-..)))))......(--(((..((((((......)))))).))))...--.........-.))))..-------- ( -39.50) >pss.2468 4857518 99 - 6093698 ACCGUAUUC-UGCGGUUCGCG--CGUCGAACCGUAACC-GGCA-AGUCCGGAUUUA----AACCGGCCGGUGCACUCACCGGACGAUCAAACAAACAUAAUC-AGGAGA--------- .((......-(((((((((..--...))))))))).((-((..-...)))).....----...((.((((((....)))))).)).................-.))...--------- ( -31.30) >psp.2379 4661254 99 - 5928787 ACCGUAUUC-UGCGGUUCGCG--CGUCGAACCGUAACC-GGCA-AGUCCGGAUUUA----AACCGGCCGGUGCACUCACCGGACGAUCAAACAAACAUAAUC-AGGAGA--------- .((......-(((((((((..--...))))))))).((-((..-...)))).....----...((.((((((....)))))).)).................-.))...--------- ( -31.30) >consensus ACAGUAUUC_CGCGGUUCGCG__CGUCGAGCCGCAACC_GGCA_AGGCCGGAUUUA_U__AACCCGCCGGUGCACACACCGGCCGAUGAAA__ACCACAAUU_AGGAGAG________ ...........(((((((((....).))))))))..((.(((....)))))............(.((((((......)))))).)................................. (-27.85 = -27.22 + -0.64)
| Location | 4,917,473 – 4,917,585 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 70.11 |
| Mean single sequence MFE | -38.97 |
| Consensus MFE | -28.42 |
| Energy contribution | -27.95 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2604 4917473 112 - 6264404 GGCAGGCUGUCUUA-CGCGGCUCGCG--CGUCGAGUCGCAACCCGGCA-ACGCCGGCUUCAACAAAACCCGCCGGACUUCGAUCCGGCCGUUGGAA--ACCACUGUUUGGGAGAGUUA ....((((.(((((-.((((((((..--...))))))))...(((((.-..)))))....((((......((((((......)))))).((.(...--.).))))))))))).)))). ( -42.10) >pfo.2678 5078860 106 - 6438405 ACCGGACAGACUUC-CGCGGUUCGCU--CGACGAGCCGCAACC-GGCGCAGGCCGGAUUCGUUA-AACCCGCCGGGA-CUACACCGGCCGAUGAAA--ACCACAAUU-AGGAGAG--- .(((((......))-)((((((((..--...))))))))..((-(((....))))).((((((.-.....(((((..-.....))))).)))))).--.........-.))....--- ( -39.90) >pel.2568 4773767 110 - 5888780 ACCGGGCAUGACACACGGGGUUCGCUGAAGGCGGGCCCUGACC-GGCA-ACGCCGGACCGAAUC-AACCCGCCGGUGCUGACACCGGCCGAUGAAA--ACCACAAUUUGGGAGAG--- .(((((..(((....((((((((((.....)))))))))).((-(((.-..)))))......))-).)))(((((((....)))))))........--..........)).....--- ( -47.90) >pf5.2946 5584407 105 - 7074893 ACCAGACAGACUUC-CGCGGCUCGCU--UGUCGAGCCGCACCC-GGCA-AAGCCGGAUUUGCU--AACCCGCCGGUAUCGACACCGGCCGUUGAAA--ACCACAAUU-AGGAGAG--- ...........(((-(((((((((..--...))))))))..((-(((.-..)))))......(--(((..((((((......)))))).))))...--.........-.))))..--- ( -39.50) >pss.2468 4857518 104 - 6093698 GCCAGACCGUAUUC-UGCGGUUCGCG--CGUCGAACCGUAACC-GGCA-AGUCCGGAUUUA----AACCGGCCGGUGCACUCACCGGACGAUCAAACAAACAUAAUC-AGGAGA---- .((...(((.....-(((((((((..--...))))))))).((-((..-...)))).....----...)))((((((....))))))....................-.))...---- ( -32.20) >psp.2379 4661254 104 - 5928787 GCCAGACCGUAUUC-UGCGGUUCGCG--CGUCGAACCGUAACC-GGCA-AGUCCGGAUUUA----AACCGGCCGGUGCACUCACCGGACGAUCAAACAAACAUAAUC-AGGAGA---- .((...(((.....-(((((((((..--...))))))))).((-((..-...)))).....----...)))((((((....))))))....................-.))...---- ( -32.20) >consensus ACCAGACAGUAUUC_CGCGGUUCGCG__CGUCGAGCCGCAACC_GGCA_AGGCCGGAUUUA_U__AACCCGCCGGUGCACACACCGGCCGAUGAAA__ACCACAAUU_AGGAGAG___ .((.............(((((((((....).))))))))..((.(((....)))))............(.((((((......)))))).)...................))....... (-28.42 = -27.95 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:47 2007