Locus 177

Sequence ID pao.2633
Location 4,971,891 – 4,971,985
Length 94
Max. P 0.996177
window746 window747

overview

Window 6

Location 4,971,891 – 4,971,985
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 67.04
Mean single sequence MFE -27.05
Consensus MFE -13.61
Energy contribution -14.17
Covariance contribution 0.56
Combinations/Pair 1.17
Mean z-score -1.63
Structure conservation index 0.50
SVM decision value 0.74
SVM RNA-class probability 0.837706
Prediction RNA

Download alignment: ClustalW | MAF

>pao.2633 4971891 94 + 6264404
GAUCGGUAGCAAUGCAACGAAAA-CGGGGCCGUCACUUUAGCGACGACCCCGUCUCUUGGCAAUCGGCCAUCCGUCGAGGAUGUACCGGGGCUGC
.....(((((..(((...((..(-(((((.((((.(....).)))).)))))).))...))).((((.(((((.....)))))..)))).))))) ( -38.30)
>pfo.2790 5301241 75 + 6438405
--UCGUUAGCAAGGCAACAAAAA-C-GGGCCGUCACUGUAGCGAUGGCCCGUGGGAAUGGCAAUCGGCCCUUGGUCGGG----------------
--......((..(....)....(-(-((((((((.(....).)))))))))).......))..((((((...)))))).---------------- ( -29.80)
>pel.2594 4824155 63 + 5888780
--UCGUUAGCGAGGCAACAAAAAAC-GGGCCGUCACUGUAGCGACCGGCCCGCCUGAUGGCAAUCA-----------------------------
--(((....)))(....).......-((((((((.(....).)).))))))(((....))).....----------------------------- ( -23.00)
>ppk.745 4682284 74 - 6181863
--UCGUUAGCGAGGCAACAAAAAAC-GGGCCGUCACUGUAGCGAUAGGCCCGCUUAAUGGCAAUCAGUCUGUGG--GAG----------------
--......((.((((..........-((((((((.(....).))).)))))(((....))).....))))))..--...---------------- ( -20.60)
>pst.2636 4996335 59 + 6397126
--UCGUUAGCAAGGCAACAAAAA-C-GGGUCGUCACUGUAGCGACGACCCCGGGGAUUGGCAA--------------------------------
--......((..(....).....-.-((((((((.(....).)))))))).........))..-------------------------------- ( -19.40)
>pf5.3103 5848553 83 + 7074893
--UCGUUAGCAAGGCAACAAAAA-C-GGGCCGUCACUUUAGCGACGGCCCUGGGGAAUGGCAAUCAGCCCUUGGUCGGGAAGAUGCC--------
--((.(((....(....).....-.-((((((((.(....).))))))))))).))..((((.((..(((......)))..))))))-------- ( -31.20)
>consensus
__UCGUUAGCAAGGCAACAAAAA_C_GGGCCGUCACUGUAGCGACGGCCCCGGGGAAUGGCAAUCAGCC_UUGG__G_G________________
........((..(....)........((((((((.(....).)))))))).........)).................................. (-13.61 = -14.17 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 4,971,891 – 4,971,985
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 67.04
Mean single sequence MFE -29.63
Consensus MFE -15.84
Energy contribution -16.23
Covariance contribution 0.39
Combinations/Pair 1.24
Mean z-score -2.67
Structure conservation index 0.53
SVM decision value 2.66
SVM RNA-class probability 0.996177
Prediction RNA

Download alignment: ClustalW | MAF

>pao.2633 4971891 94 - 6264404
GCAGCCCCGGUACAUCCUCGACGGAUGGCCGAUUGCCAAGAGACGGGGUCGUCGCUAAAGUGACGGCCCCG-UUUUCGUUGCAUUGCUACCGAUC
(((((..((((.(((((.....)))))))))........((((((((((((((((....))))))))))))-)))).)))))............. ( -47.40)
>pfo.2790 5301241 75 - 6438405
----------------CCCGACCAAGGGCCGAUUGCCAUUCCCACGGGCCAUCGCUACAGUGACGGCCC-G-UUUUUGUUGCCUUGCUAACGA--
----------------..((..(((((((.....)))......(((((((.((((....)))).)))))-)-).........))))....)).-- ( -25.60)
>pel.2594 4824155 63 - 5888780
-----------------------------UGAUUGCCAUCAGGCGGGCCGGUCGCUACAGUGACGGCCC-GUUUUUUGUUGCCUCGCUAACGA--
-----------------------------.((..((((..((((((((((.((((....))))))))))-))))..))..)).))........-- ( -24.60)
>ppk.745 4682284 74 + 6181863
----------------CUC--CCACAGACUGAUUGCCAUUAAGCGGGCCUAUCGCUACAGUGACGGCCC-GUUUUUUGUUGCCUCGCUAACGA--
----------------...--.........((..((((..(((((((((..((((....)))).)))))-))))..))..)).))........-- ( -21.80)
>pst.2636 4996335 59 - 6397126
--------------------------------UUGCCAAUCCCCGGGGUCGUCGCUACAGUGACGACCC-G-UUUUUGUUGCCUUGCUAACGA--
--------------------------------.............((((((((((....))))))))))-.-...(((((((...)).)))))-- ( -21.40)
>pf5.3103 5848553 83 - 7074893
--------GGCAUCUUCCCGACCAAGGGCUGAUUGCCAUUCCCCAGGGCCGUCGCUAAAGUGACGGCCC-G-UUUUUGUUGCCUUGCUAACGA--
--------((((((..(((......)))..)).))))........((((((((((....))))))))))-.-...(((((((...)).)))))-- ( -37.00)
>consensus
________________C_C__CCAA_GGCUGAUUGCCAUUACCCGGGGCCGUCGCUACAGUGACGGCCC_G_UUUUUGUUGCCUUGCUAACGA__
.............................................((((((((((....))))))))))......(((((((...)).))))).. (-15.84 = -16.23 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:45 2007