| Sequence ID | pao.2704 |
|---|---|
| Location | 5,121,806 – 5,121,898 |
| Length | 92 |
| Max. P | 1.000000 |
| Location | 5,121,806 – 5,121,898 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 66.06 |
| Mean single sequence MFE | -41.15 |
| Consensus MFE | -29.81 |
| Energy contribution | -31.70 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.47 |
| Structure conservation index | 0.72 |
| SVM decision value | 8.00 |
| SVM RNA-class probability | 1.000000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2704 5121806 92 + 6264404 UGCCCAGGCGGCAGGCAACGCAAGCCGGAAACGCCGCCGCCCGUCCGUUUUACAACGGCCGGGCGGCGCGAGCGAAACACUGGAGAGGGUCG .((((.((((((.(((.......)))(....)))))))(((((.(((((....))))).))))).((....)).............)))).. ( -48.40) >pau.2841 5394271 90 + 6537648 UGCCCAGGCACCAGGCAACGCAAGCCGGAAACGCCGCCGCCCGUCCGUUUUACAACGGCCGGGCGGCGCGAGCGAAACACUGGAGAGGGU-- .((((...(.((((....(((..((((....))..((((((((.(((((....))))).))))))))))..))).....)))).).))))-- ( -47.20) >pfo.2886 5483228 66 + 6438405 UGCCUCGGCCGAACAAAGUACAAGCCACAAACGACACCGCCCGUCUGUUUCGCAACAGACGGGCGG-------------------------- ......(((..............)))..........(((((((((((((....)))))))))))))-------------------------- ( -27.84) >consensus UGCCCAGGCAGCAGGCAACGCAAGCCGGAAACGCCGCCGCCCGUCCGUUUUACAACGGCCGGGCGGCGCGAGCGAAACACUGGAGAGGGU__ .((((.(((....(....)....)))........(((((((((.(((((....))))).)))))))))..................)))).. (-29.81 = -31.70 + 1.89)
| Location | 5,121,806 – 5,121,898 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 66.06 |
| Mean single sequence MFE | -42.47 |
| Consensus MFE | -30.28 |
| Energy contribution | -31.84 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.71 |
| SVM decision value | 7.32 |
| SVM RNA-class probability | 1.000000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2704 5121806 92 - 6264404 CGACCCUCUCCAGUGUUUCGCUCGCGCCGCCCGGCCGUUGUAAAACGGACGGGCGGCGGCGUUUCCGGCUUGCGUUGCCUGCCGCCUGGGCA .(.(((....(((.((..(((..((((((((((.(((((....))))).))))))))((.....)).))..)))..)))))......)))). ( -45.00) >pau.2841 5394271 90 - 6537648 --ACCCUCUCCAGUGUUUCGCUCGCGCCGCCCGGCCGUUGUAAAACGGACGGGCGGCGGCGUUUCCGGCUUGCGUUGCCUGGUGCCUGGGCA --.(((.(.((((.((..(((..((((((((((.(((((....))))).))))))))((.....)).))..)))..)))))).)...))).. ( -48.70) >pfo.2886 5483228 66 - 6438405 --------------------------CCGCCCGUCUGUUGCGAAACAGACGGGCGGUGUCGUUUGUGGCUUGUACUUUGUUCGGCCGAGGCA --------------------------(((((((((((((....)))))))))))))((((.....(((((.(........).))))).)))) ( -33.70) >consensus __ACCCUCUCCAGUGUUUCGCUCGCGCCGCCCGGCCGUUGUAAAACGGACGGGCGGCGGCGUUUCCGGCUUGCGUUGCCUGCCGCCUGGGCA ...................((((.(((((((((.(((((....))))).)))))))))........(((..............))).)))). (-30.28 = -31.84 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:40 2007