Locus 174

Sequence ID pao.274
Location 496,599 – 496,710
Length 111
Max. P 0.952550
window740

overview

Window 0

Location 496,599 – 496,710
Length 111
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 54.27
Mean single sequence MFE -40.15
Consensus MFE -17.91
Energy contribution -19.85
Covariance contribution 1.94
Combinations/Pair 1.36
Mean z-score -1.89
Structure conservation index 0.45
SVM decision value 1.42
SVM RNA-class probability 0.952550
Prediction RNA

Download alignment: ClustalW | MAF

>pao.274 496599 111 - 6264404
ACUGGAGGUAACCGACUGAUCUGAAACACUU---------CAUCGACAACGUCGGUGACACGCCGACGGGCAGUCCGGCGUGUCACCGGGGGAAAUGCGCGAGCCUGUCGCCCCGGUCAG
(((((.(((....((.(((..((...))..)---------))))((((.(.((((((((((((((((.....)).)))))))))))))).).....((....)).))))))))))))... ( -50.90)
>pau.281 511350 111 - 6537648
ACUGGAGGUAACCGACUGAUCUGAAACACUU---------CAUCGACAACGUCGGUGACACGCCGACGGGCAGUCCGGCGUGUCACCGGGGGAAAUGCGCGAGCCUGUCGCCCCGGUCAG
(((((.(((....((.(((..((...))..)---------))))((((.(.((((((((((((((((.....)).)))))))))))))).).....((....)).))))))))))))... ( -50.90)
>pf5.1549 2820954 110 - 7074893
AUCCAU-GUAAACAACUGAUGUCAUUGGGUUUUAUGCAAGCAACUUUCAAGCCCCUGGUUAGUUGCCAAUCAACUCAG------GCCGGGUGUUUGGCAAG---UUGUCCAUUCGUUCAG
......-........((((......(((((.....))..(((((((((((((.((((((((((((.....)))))..)------)))))).)))))).)))---))))))).....)))) ( -32.30)
>pfo.2015 2513824 111 + 6438405
UCUUGUUGUAACUGACUGAUGUUUAUCAGUUUUAAUUAUUCACCUGUUCAGGCCGCGAAAACUUGACUGAACACUCAG------GCCAAAUGCCAGGCAAG---UUGUCCGAACUGUCAG
...((..((((..(((((((....)))))))....)))).)).(((..(((..((.((.(((((..((((....))))------(((........))))))---)).))))..))).))) ( -26.50)
>consensus
ACUGGAGGUAACCGACUGAUCUGAAACACUU_________CAUCGACAAAGUCCGUGACAAGCCGACGGGCAACCCAG______ACCGGGGGAAAGGCAAG___CUGUCCCCCCGGUCAG
...............((((((............................(.((((((((((((((..........)))))))))))))).)....((((......)).))....)))))) (-17.91 = -19.85 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:38 2007