| Sequence ID | pao.261 |
|---|---|
| Location | 469,974 – 470,073 |
| Length | 99 |
| Max. P | 0.532787 |
| Location | 469,974 – 470,073 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 65.84 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -11.10 |
| Energy contribution | -10.58 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.49 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.261 469974 99 - 6264404 UUCCUUGAAAAGCGAAGCCUCAAGACUAGCGGCAAAUCCAUCGAGUUAAAGCAGAAAAUUCUGCUUUGAAACAUCGAUUCACAAGAU---AGGUUCGCAGGC ...........((((((((.(.......).)))......(((((.((((((((((....))))))))))....))))).........---...))))).... ( -27.70) >pf5.3509 462718 101 + 7074893 UCCUGUAAGAAACGCAGAU-CAAGACUAGCGAUUUACCUAUCGAAUUAAAGCGGAAUUUUUUGCUUUGAAAUAUCGAGAAAUACGAUCAGUAGUCUGGACCG ..((((.......)))).(-(.((((((..((((......((((.((((((((((....))))))))))....)))).......))))..)))))).))... ( -23.72) >psp.267 509070 90 - 5928787 CCUUGUCAGAAGUGUUA---CCAGACUAGCUUUUUAUCUAUCGAAUGAAAGCGCAAAAUUUCGCUCGGACGUAUCGAACAAUACGAU---AGGUCU------ ........((((((((.---...)))..((((((..((....))..)))))).....)))))....((((.(((((.......))))---).))))------ ( -18.40) >pss.280 493297 90 - 6093698 CCUUGUCAGAAGUGUUA---CCAGACUAGCUUUUUAUCUAUCGAAUGAAAGCGCAAAAUUUCGCUCGGACGUAUCGAACAAUACGAU---AGGUCU------ ........((((((((.---...)))..((((((..((....))..)))))).....)))))....((((.(((((.......))))---).))))------ ( -18.40) >pel.2900 533352 98 + 5888780 -CCCGUGAAAGCUGUGC---ACAGACUAGCGCGUAACAUAUCGAAGAAAAGCGGAAAAAAUUGCUUCGGAUAAUCGAAAAAUCCGAUGUUUAGUCUGCAACC -..((((..(((((...---.))).))..)))).................(((((..((((....((((((.........)))))).))))..))))).... ( -24.00) >pfo.3129 490722 101 + 6438405 UCCUGUGAGAACUGCGAAC-CAAGACUAGCGAGUUAUCUAUCGAAUUAAAGCGGAAAAUUUCGCUUUGAAAUAUCGAGAAAUACGAUCAAGAGUCUUGAACA ...................-(((((((...((..(((...((((.((((((((((....))))))))))....))))...)))...))...))))))).... ( -23.50) >consensus UCCUGUGAGAAGUGUAA___CAAGACUAGCGAUUUAUCUAUCGAAUUAAAGCGGAAAAUUUCGCUUUGAAAUAUCGAAAAAUACGAU___AAGUCUG_A_C_ ......................(((((.............(((((((.(((((((....)))))))...))).))))..............)))))...... (-11.10 = -10.58 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:37 2007