Locus 170

Sequence ID pao.215
Location 395,983 – 396,056
Length 73
Max. P 0.999988
window731 window732

overview

Window 1

Location 395,983 – 396,056
Length 73
Sequences 3
Columns 73
Reading direction forward
Mean pairwise identity 74.19
Mean single sequence MFE -35.50
Consensus MFE -27.76
Energy contribution -28.10
Covariance contribution 0.34
Combinations/Pair 1.17
Mean z-score -2.57
Structure conservation index 0.78
SVM decision value 4.45
SVM RNA-class probability 0.999900
Prediction RNA

Download alignment: ClustalW | MAF

>pao.215 395983 73 + 6264404
CCGCCAUUCGGCGCGCGUACGCGUGAAUGAAAAAGCCCGGCGCGGGACCGGGCUUUUUUCGUCGCUGGACGAU
....((((((.((((....))))))))))((((((((((((....).)))))))))))(((((....))))). ( -34.40)
>pau.220 410144 71 + 6537648
CCGCCAUUCGGCGUGCGCACGCGCGAAUGAAAAAGCCCGGCGCGGGACCGGGCUUUUUUCGUCGCGGGACG--
((((((((((((((....)))).))))))((((((((((((....).))))))))))).....))))....-- ( -37.30)
>pf5.3245 957350 67 - 7074893
CCGCCUGUCGCCGCGGCCCUGCGGGCACAAAAAAGCCCGGCACUGGGCCGGGCUUUUUCUGCUGCAG------
((((........))))..((((((.((..((((((((((((.....)))))))))))).))))))))------ ( -34.80)
>consensus
CCGCCAUUCGGCGCGCGCACGCGCGAAUGAAAAAGCCCGGCGCGGGACCGGGCUUUUUUCGUCGCAGGACG__
..(((((((.(((((....))))))))))(((((((((((.......))))))))))).....))........ (-27.76 = -28.10 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 395,983 – 396,056
Length 73
Sequences 3
Columns 73
Reading direction reverse
Mean pairwise identity 74.19
Mean single sequence MFE -36.57
Consensus MFE -28.17
Energy contribution -29.73
Covariance contribution 1.56
Combinations/Pair 1.15
Mean z-score -3.19
Structure conservation index 0.77
SVM decision value 5.48
SVM RNA-class probability 0.999988
Prediction RNA

Download alignment: ClustalW | MAF

>pao.215 395983 73 - 6264404
AUCGUCCAGCGACGAAAAAAGCCCGGUCCCGCGCCGGGCUUUUUCAUUCACGCGUACGCGCGCCGAAUGGCGG
.(((((....)))))((((((((((((.....))))))))))))(((((.((((....))))..))))).... ( -34.60)
>pau.220 410144 71 - 6537648
--CGUCCCGCGACGAAAAAAGCCCGGUCCCGCGCCGGGCUUUUUCAUUCGCGCGUGCGCACGCCGAAUGGCGG
--....((((.....((((((((((((.....))))))))))))((((((.((((....)))))))))))))) ( -38.20)
>pf5.3245 957350 67 + 7074893
------CUGCAGCAGAAAAAGCCCGGCCCAGUGCCGGGCUUUUUUGUGCCCGCAGGGCCGCGGCGACAGGCGG
------((((.((((((((((((((((.....))))))))))))).)))..)))).(((..(....).))).. ( -36.90)
>consensus
__CGUCCAGCGACGAAAAAAGCCCGGUCCCGCGCCGGGCUUUUUCAUUCACGCGUGCGCGCGCCGAAUGGCGG
......((((.....((((((((((((.....))))))))))))((((((((((....))))).))))))))) (-28.17 = -29.73 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:29 2007