Locus 168

Sequence ID	pao.3143
Location	5,950,351 – 5,950,428
Length	77
Max. P	0.981110

overview

Window 6

Location	5,950,351 – 5,950,428
Length	77
Sequences	6
Columns	77
Reading direction	reverse
Mean pairwise identity	62.29
Mean single sequence MFE	-19.55
Consensus MFE	-9.07
Energy contribution	-7.77
Covariance contribution	-1.30
Combinations/Pair	1.78
Mean z-score	-2.27
Structure conservation index	0.46
SVM decision value	1.88
SVM RNA-class probability	0.981110
Prediction	RNA

Download alignment: ClustalW | MAF

>pao.3143 5950351 77 - 6264404
AUUUUUUCCGGCGGCGCUCAUCAAAACGCGCGGCUGGGCUAUAACUAACCUGCUUUUGCAGCACCGAGAGGUUGACC
......((((((.((((..........)))).))))))...........((((....)))).(((....)))..... ( -26.10)
>pau.3281 6223565 77 - 6537648
AUUUUUUCCGGCGGCGCUCAUCAAAACGCGCGGCUGGGCUAUAACUAACCUGCUUUUGCAGCACCGAGAGGUUGACC
......((((((.((((..........)))).))))))...........((((....)))).(((....)))..... ( -26.10)
>pfo.3251 6169307 56 - 6438405
-UUUUUUCCGGCGACUUUCGACAGUCGCCAAAGCUGGUCUAUAACUAAUCUGCUUUU--------------------
-........(((((((......)))))))(((((.(((.........))).))))).-------------------- ( -16.00)
>ppk.3051 5965942 56 - 6181863
-UUUUCACUGGUGGCUGCCGGUCUACGGCUGCACUGGUCUAUAACCAACCUGCUUUU--------------------
-........(((.((.((((.....)))).))..((((.....))))))).......-------------------- ( -15.80)
>pel.3097 5690943 56 - 5888780
-UUUUCACUGGUGGCUGCCGGUCUACGGCUGCACCGGUCUAUAACUAACCUGCUUUU--------------------
-.....(((((((.(.((((.....)))).))))))))...................-------------------- ( -18.30)
>pf5.3632 6836928 56 - 7074893
-UUUUUUCCAGCGGCCUUCGACAGUCGGCACAGCUGGGCUAUAACUAAUCUGCUUUU--------------------
-.....((((((.(((..(....)..)))...))))))...................-------------------- ( -15.00)
>consensus
_UUUUUUCCGGCGGCUCUCGACAAACGGCACAGCUGGGCUAUAACUAACCUGCUUUU____________________
......((((((.(((..........)))...))))))....................................... ( -9.07 =  -7.77 +  -1.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:24 2007