Locus 166

Sequence ID pao.2963
Location 5,595,109 – 5,595,226
Length 117
Max. P 0.500000
window721

overview

Window 1

Location 5,595,109 – 5,595,226
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 62.83
Mean single sequence MFE -38.68
Consensus MFE -20.74
Energy contribution -25.24
Covariance contribution 4.50
Combinations/Pair 1.19
Mean z-score -1.10
Structure conservation index 0.54
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>pao.2963 5595109 117 + 6264404
CGAGGGUACGCGCAGGGGUCUUCGAGAUGGCUCAUUAUUCUUGUCUCCACUCUG--UCAGAGGCCGUGUCUUGCGCACGGAU-GAGCGGAUUAUUGGCGGCGGAUGUAAGACGCCGUUGA
((((((..(......)..)))))).((((((((.((((..(((((.(((.((((--(((....((((((.....)))))).)-)).))))....))).)))))..)))))).)))))).. ( -39.50)
>pau.3102 5866506 117 + 6537648
UGAGGGUACGCGCAGGGGUCUUCGAGAUGGCUCAUUAUUCUUGUCUCCACUCUG--UCAGAGGCCGUGUCUUGCGCACGGAU-GAGCGGAUUAUUGGCGGCGGAUGUAAGACGCCGUUGA
.(((((..(......)..)))))..((((((((.((((..(((((.(((.((((--(((....((((((.....)))))).)-)).))))....))).)))))..)))))).)))))).. ( -37.70)
>pf5.1648 4086736 117 - 7074893
UGGCGGAAGGCGGAAGCAGCUUGCAGGCAGUUCAUUAUUAUUAUCUCCAAUAAGCUUCGAAGGCCGCGGC--GGGCGCGGCU-CAAGCGAUUAUUGGAAAGCCAUGUAAGUUCGGAUUGA
...(....)((....))((((((((((((((.....)))......(((((((.((((.((..((((((..--...)))))))-)))))...)))))))..))).))))))))........ ( -41.10)
>ppk.2166 4253735 93 + 6181863
-------------------------GGCAUGUCAUUAUUCUUGUCUCCAAUAAGCCUCAUGGACCGUGUG--CAACACGGUUGCCAUGGAUUAUUGGAAACGGAUGUAAGGCGCCGUUAU
-------------------------(((..(((.((((..((((.((((((((...((((((((((((..--...))))))..)))))).)))))))).))))..))))))))))..... ( -36.40)
>consensus
UGAGGGUACGCGCAGGGGUCUUCGAGACAGCUCAUUAUUCUUGUCUCCAAUAAG__UCAGAGGCCGUGUC__GCGCACGGAU_CAACGGAUUAUUGGAAACGGAUGUAAGACGCCGUUGA
.........................((((((...((((..(((((((((((((........((((((((.....))))))))........)))))))))))))..))))...)))))).. (-20.74 = -25.24 +   4.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:18 2007