| Sequence ID | pao.2969 |
|---|---|
| Location | 5,606,018 – 5,606,102 |
| Length | 84 |
| Max. P | 0.938932 |
| Location | 5,606,018 – 5,606,102 |
|---|---|
| Length | 84 |
| Sequences | 5 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 63.19 |
| Mean single sequence MFE | -21.44 |
| Consensus MFE | -9.51 |
| Energy contribution | -9.87 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.44 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.938932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2969 5606018 84 - 6264404 GGCGGGGUCCUCCGGAAACUGCGGCCAUUCUAGGGAGCCGGCGGAUGGGAUAAAGUCGUUACCUAUCUUUAUUGGAGAUAGGUU (((...((((((((....)..(((((........).))))..)))..))))...)))...(((((((((.....))))))))). ( -29.90) >pfo.263 5872405 57 + 6438405 -------------------------CAUUCUAGUGACUCCCCAGAUGGGGUAAAGUCAUUACCUAUCUGUUUACAAGAUGGG-- -------------------------.....((((((((((((....))))...))))))))(((((((.......)))))))-- ( -22.60) >pel.2862 5286436 57 - 5888780 -------------------------CAUUCUAGAGGAUGCCAAGAUGCGGUAAAGUCAUUACCUAUCUGAUUUGGAGAUGGG-- -------------------------(((((((((((...)).(((((.(((((.....))))))))))..)))))).)))..-- ( -12.30) >pf5.314 6451165 57 + 7074893 -------------------------CAUUCUAGAGAAAGUUCAGAUGGGGUAAAGUCAUUACCUAUCUGGAUGAUAGAUAGG-- -------------------------....(((......(((((((((((............)))))))))))......))).-- ( -16.90) >pau.3108 5877417 80 - 6537648 --CGGCGUCCUCCGGAAACUGCGGCCAUUCUAGGGAGCCGGCGGAUGGGAUAAAGUCGUUACCUAUCUGUAUUGGAGAUAGG-- --((((.(((((((....)..(((((........).))))..))).))).....))))...(((((((.......)))))))-- ( -25.50) >consensus _________________________CAUUCUAGAGAACCCCCAGAUGGGGUAAAGUCAUUACCUAUCUGUAUUGGAGAUAGG__ .............................(((........(((((((((.(((.....))))))))))))........)))... ( -9.51 = -9.87 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:17 2007