| Sequence ID | pao.3067 |
|---|---|
| Location | 5,805,136 – 5,805,205 |
| Length | 69 |
| Max. P | 0.991957 |
| Location | 5,805,136 – 5,805,205 |
|---|---|
| Length | 69 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 75.75 |
| Mean single sequence MFE | -24.06 |
| Consensus MFE | -23.05 |
| Energy contribution | -23.80 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.07 |
| Mean z-score | -5.93 |
| Structure conservation index | 0.96 |
| SVM decision value | 2.30 |
| SVM RNA-class probability | 0.991957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.3067 5805136 69 + 6264404 UUGUUAAUCGCUGCCUAGGCAGUAUUAUUUUGAAACACUUUCCCUGCCUAGACAGCGAUCCCCUCCACC ......(((((((.((((((((.....................)))))))).))))))).......... ( -23.10) >pau.3204 6077306 67 + 6537648 UUGUUAAUCGCUGCCUAGGCAGUAUUAUUUUGAAACACUUUCCCUGCCUAGACAGCGAUCCCCUCCA-- ......(((((((.((((((((.....................)))))))).)))))))........-- ( -23.10) >pf5.2374 2550059 59 - 7074893 UUGACAUUCGCUGCCUAGGCAGUAACAUCUCGACAUAUAUUCACUGCCUAGGCAGUUAU---------- .........((((((((((((((...................))))))))))))))...---------- ( -25.01) >pfo.2136 2315253 59 - 6438405 UUGACAUUCGCUGCCUAGGCAGUAACAUCUCGACAUACAUUCACUGCCUAGGCAGUUAU---------- .........((((((((((((((...................))))))))))))))...---------- ( -25.01) >consensus UUGACAAUCGCUGCCUAGGCAGUAACAUCUCGAAACACAUUCACUGCCUAGACAGCGAU__________ .......(((((((((((((((.....................)))))))))))))))........... (-23.05 = -23.80 + 0.75)
| Location | 5,805,136 – 5,805,205 |
|---|---|
| Length | 69 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 75.75 |
| Mean single sequence MFE | -30.27 |
| Consensus MFE | -24.70 |
| Energy contribution | -25.95 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.14 |
| Mean z-score | -6.68 |
| Structure conservation index | 0.82 |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.985644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.3067 5805136 69 - 6264404 GGUGGAGGGGAUCGCUGUCUAGGCAGGGAAAGUGUUUCAAAAUAAUACUGCCUAGGCAGCGAUUAACAA ......(..(((((((((((((((((......((((....))))...)))))))))))))))))..).. ( -33.60) >pau.3204 6077306 67 - 6537648 --UGGAGGGGAUCGCUGUCUAGGCAGGGAAAGUGUUUCAAAAUAAUACUGCCUAGGCAGCGAUUAACAA --....(..(((((((((((((((((......((((....))))...)))))))))))))))))..).. ( -33.60) >pf5.2374 2550059 59 + 7074893 ----------AUAACUGCCUAGGCAGUGAAUAUAUGUCGAGAUGUUACUGCCUAGGCAGCGAAUGUCAA ----------....(((((((((((((((.(((........)))))))))))))))))).......... ( -27.40) >pfo.2136 2315253 59 + 6438405 ----------AUAACUGCCUAGGCAGUGAAUGUAUGUCGAGAUGUUACUGCCUAGGCAGCGAAUGUCAA ----------....(((((((((((((((((.(......).)).))))))))))))))).......... ( -26.50) >consensus __________AUAACUGCCUAGGCAGGGAAAGUAUGUCAAAAUAAUACUGCCUAGGCAGCGAAUAACAA ...........((((((((((((((((((...(((......)))))))))))))))))))))....... (-24.70 = -25.95 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:16 2007