Locus 162

Sequence ID pao.108
Location 212,109 – 212,228
Length 119
Max. P 0.678822
window715

overview

Window 5

Location 212,109 – 212,228
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 69.68
Mean single sequence MFE -38.33
Consensus MFE -21.33
Energy contribution -22.20
Covariance contribution 0.87
Combinations/Pair 1.44
Mean z-score -1.56
Structure conservation index 0.56
SVM decision value 0.30
SVM RNA-class probability 0.678822
Prediction RNA

Download alignment: ClustalW | MAF

>pao.108 212109 119 + 6264404
UAAGAAGGGCCAUUUAAAGAAAGGCCCCAGGCA-GCGGCAAAUGCAUUUGGAGAAUAUUUUCCAUGCUCUGGCUGCAUAUGACGCGGAGAGGCCCGUGCGGCCUGUCAUACUGCUUGUGG
......(((((.(((....))))))))((((((-(((((....(((..((((((....)))))))))....)))))..........((.(((((.....))))).))....))))))... ( -46.10)
>pau.108 210970 119 + 6537648
UAAGAAGGGUCAUUUAAAGAAAGGCGCCAGGCA-GCGGCAAAUGCAUUUGGAGAAUAUUUUCCAUGCUCUGGCUGCAUAUGACGCGGAGAGGCCCGUGCGGCCUGUCAUACUGCUUAUGG
((((..(.(((((..........((((((((((-(((.....)))...((((((....))))))))).))))).))..))))).).((.(((((.....))))).))......))))... ( -40.40)
>pf5.122 244692 118 + 7074893
UAAGAAAGGCCAUUUAAGGCUUCUCGCC-GACACGCAUCCAAUGCAUUUGAAGAAUAUUUUUCAUGCAUUUCAUGCAUAUCCCCGGGGACG-CCCGUGGCAGCUGGUUUAUUCGAUAUGG
...((.(((((......))))).))(((-(....((((..((((((..((((((....))))))))))))..)))).......((((....-)))))))).................... ( -33.40)
>pfo.110 250984 120 + 6438405
UAAGCAGCGCCAUUUAAGGCCUCCAGCCCUGCGCGCAUCCAAUGCAUUCGAAGAAUAUUUUCGAUGCUCUCCAUGCAUACGGCUCUGCAUGUCCCGACUUUGCUGGCUUAGCUUGAAAAG
(((((((.(((......)))))..((((..((..((((.....((((.((((((...)))))))))).....))))...(((..(.....)..))).....)).))))..)))))..... ( -33.40)
>consensus
UAAGAAGGGCCAUUUAAAGAAACGCGCCAGGCA_GCAGCAAAUGCAUUUGAAGAAUAUUUUCCAUGCUCUGCAUGCAUAUGACGCGGAAAGGCCCGUGCGGCCUGGCAUACUGCUUAUGG
..................((((((((........(((((....((((..(((((....)))))))))....)))))......(((((......))))).))))))))............. (-21.33 = -22.20 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:12 2007