| Sequence ID | pao.2535 |
|---|---|
| Location | 4,767,718 – 4,767,810 |
| Length | 92 |
| Max. P | 0.991600 |
| Location | 4,767,718 – 4,767,810 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 66.00 |
| Mean single sequence MFE | -27.82 |
| Consensus MFE | -14.84 |
| Energy contribution | -15.30 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.25 |
| Mean z-score | -4.50 |
| Structure conservation index | 0.53 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2535 4767718 92 + 6264404 UUGUACGGAUGCCCCCACAGGGUGUCAAUAUUUAACCAACGAACGAAAAAAGGGGCCCCG------GAGGGCCCCUUUUCUGAUGGCAGGAUCAGCGA .......(((((((.....))))))).................((..(((((((((((..------..)))))))))))(((((......))))))). ( -33.90) >pst.395 5705699 66 - 6397126 UUCUAUAGACGGGCUGGCAAGGUGUCAAC------CCAAU------AAAAAAG-CCCCCGCGUGGCGGGGGCUCUUUUU------------------- ..........(((.((((.....)))).)------))...------((((.((-(((((((...))))))))).)))).------------------- ( -29.40) >pss.2752 5403561 66 + 6093698 UUCUAUAGACGACCUAACAAGGUGUCAAC------CCAAU------AAAAAAG-CCCCCGCAGUGCGGGGGCUCUUUUU------------------- .......(((.((((....)))))))...------.....------((((.((-(((((((...))))))))).)))).------------------- ( -26.90) >ppk.268 5631266 65 - 6181863 UUCUAUAGACGCCCCCAAUUAGUGUCAAC------CCAAU------AAAAAAAACCCCCGCUGAGCGGGGGUUUUUU--------------------- .......(((((.........)))))...------.....------..(((((((((((((...)))))))))))))--------------------- ( -24.80) >pf5.3368 6362630 63 + 7074893 UUCUAUAGACGGCCCCACAGAGUGUCAAC------CCAAU------AAAAAAG-CCCCCGC-AAGCGGGGGCUUCUU--------------------- .......((((..(.....)..))))...------.....------....(((-((((((.-...)))))))))...--------------------- ( -20.90) >pfo.2992 5705706 64 + 6438405 UUCUAUAGACGCCCCAGAUAGGUGUCAAC------CCAAU------AAAAAAG-CCCCCGCUAAGCGGGGGCUUUUU--------------------- .......((((((.......))))))...------.....------.((((((-(((((((...)))))))))))))--------------------- ( -31.00) >consensus UUCUAUAGACGCCCCCACAAGGUGUCAAC______CCAAU______AAAAAAG_CCCCCGC_AAGCGGGGGCUCUUU_____________________ .......((((.(((....))))))).........................((.(((((((...)))))))))......................... (-14.84 = -15.30 + 0.46)
| Location | 4,767,718 – 4,767,810 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 66.00 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -18.28 |
| Energy contribution | -17.43 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.42 |
| Mean z-score | -4.31 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.983169 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2535 4767718 92 - 6264404 UCGCUGAUCCUGCCAUCAGAAAAGGGGCCCUC------CGGGGCCCCUUUUUUCGUUCGUUGGUUAAAUAUUGACACCCUGUGGGGGCAUCCGUACAA ..((.(((.((.(((.((((((((((((((..------..))))))))))).......((..((.....))..))...)))))).)).))).)).... ( -37.50) >pst.395 5705699 66 + 6397126 -------------------AAAAAGAGCCCCCGCCACGCGGGGG-CUUUUUU------AUUGG------GUUGACACCUUGCCAGCCCGUCUAUAGAA -------------------.((((((((((((((...)))))))-)))))))------...((------((((.(.....).)))))).......... ( -33.20) >pss.2752 5403561 66 - 6093698 -------------------AAAAAGAGCCCCCGCACUGCGGGGG-CUUUUUU------AUUGG------GUUGACACCUUGUUAGGUCGUCUAUAGAA -------------------.((((((((((((((...)))))))-)))))))------.....------...(((((((....)))).)))....... ( -30.80) >ppk.268 5631266 65 + 6181863 ---------------------AAAAAACCCCCGCUCAGCGGGGGUUUUUUUU------AUUGG------GUUGACACUAAUUGGGGGCGUCUAUAGAA ---------------------.((((((((((((...))))))))))))(((------((.((------(((..((.....))..))).)).))))). ( -22.70) >pf5.3368 6362630 63 - 7074893 ---------------------AAGAAGCCCCCGCUU-GCGGGGG-CUUUUUU------AUUGG------GUUGACACUCUGUGGGGCCGUCUAUAGAA ---------------------((((((((((((...-.))))))-)))))).------.....------........((((((((....)))))))). ( -27.80) >pfo.2992 5705706 64 - 6438405 ---------------------AAAAAGCCCCCGCUUAGCGGGGG-CUUUUUU------AUUGG------GUUGACACCUAUCUGGGGCGUCUAUAGAA ---------------------(((((((((((((...)))))))-)))))).------.....------...(((.(((.....))).)))....... ( -28.60) >consensus _____________________AAAAAGCCCCCGCUC_GCGGGGG_CUUUUUU______AUUGG______GUUGACACCUUGUGGGGGCGUCUAUAGAA .....................(((((((((((((...))))))).)))))).....................(((.(((....)))..)))....... (-18.28 = -17.43 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:02 2007