| Sequence ID | pao.3116 |
|---|---|
| Location | 5,900,160 – 5,900,278 |
| Length | 118 |
| Max. P | 0.833997 |
| Location | 5,900,160 – 5,900,278 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.30 |
| Mean single sequence MFE | -43.12 |
| Consensus MFE | -31.93 |
| Energy contribution | -31.52 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.3116 5900160 118 + 6264404 AAAGCGUCGAGCUUGGGAAAGCCGUGUCGC-AAGGGGGCGACAGGAGCGCUAGAAAGUUCG-AGUAGGAAGUGCGUCCGGGACGGCAUGCAGAAGGCGACGGAAAAAACGUCGCGAACCC ...((.((((((((.((...(((.((((((-......)))))).).)).))...)))))))-))).((...((((((((...))).)))))....((((((.......))))))...)). ( -46.40) >pf5.3611 6800378 117 + 7074893 -AAGCUUUUGGCUUAAUGAGGCCGCGCCGCAGAGAAGGCGACAGGAUCGCGUACUAAUUCGAAA--AGGAGAGCGUCGGCGACGGCUUGCAGGGGGCAAUGGAGAAACCAGUGCGGGGCC -........(((((..((((((((((((((..((.(.((((.....)))).).))..(((....--.)))....).))))).)))))).))....(((.(((.....))).))).))))) ( -38.20) >pfo.3225 6124493 117 + 6438405 -AAGCUUUUGGCUUAAUGAGGCCGCGCCGCGGAGAAGGCGACAGGAUCGCGUACUUAUUCGAAA--AGGAGUGCGUCGGCGACGGCUAGCAGGGGGCAGUGGAGAAACCAGUGCGGGGCC -........(((((.....(((((((((((.......((((.....))))((((((........--..))))))).))))).)))))........(((.(((.....))).))).))))) ( -43.20) >ppk.3041 5948500 116 + 6181863 -AAGCUUCUGGCUUAAUGAGGCCGCGCCGC-UGGAUGGCGACAGGAUCGCGUACUGAUUCG-AAUUAGGGAUGCUUCGGCGACGGCAUGUAGAGGGCACUGGAAAAG-CAGUGCGAGGCC -..(((((...(((......((((((((((-((........)))....((((.(((((...-.)))))..))))..))))).))))......)))((((((......-))))))))))). ( -44.30) >pel.3074 5652629 117 + 5888780 -AAGCAUUUGGCUUAAUGAGGCCGCGCCGC-UAGAUGGCGACAAGAUCGCGUACUGAUUCG-AAUUAGGGAUGCUUCGGCGACGGCGUGCAGAGGGCACUGAAAGGGUCAGUGCGAGGCC -........(((((..(((.((((((((((-(....))).....((..((((.(((((...-.)))))..)))).)))))).)))).).))....(((((((.....))))))).))))) ( -43.00) >pst.3116 5962949 116 + 6397126 -AAGCUUUUGGCUUAAUGAGGCCGCGCCGCAGAAAAGGCGACAGGAUCGCGUACUAAAUCG-AA--AGGAGAGCGUCGGCGACGGCUAGCAGGGGGCAACGGAGAAGCCGUUGCGGGGCC -........(((((.....(((((((((((.......((((.....))))((.((...((.-..--.)))).))).))))).)))))........(((((((.....))))))).))))) ( -43.60) >consensus _AAGCUUUUGGCUUAAUGAGGCCGCGCCGC_GAGAAGGCGACAGGAUCGCGUACUAAUUCG_AA__AGGAGUGCGUCGGCGACGGCUUGCAGAGGGCAAUGGAAAAACCAGUGCGAGGCC .........(((((......(((((((((........((((.....)))).......(((.......)))......))))).)))).........(((((((.....))))))).))))) (-31.93 = -31.52 + -0.41)
| Location | 5,900,160 – 5,900,278 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.30 |
| Mean single sequence MFE | -34.75 |
| Consensus MFE | -27.84 |
| Energy contribution | -28.29 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.833997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.3116 5900160 118 - 6264404 GGGUUCGCGACGUUUUUUCCGUCGCCUUCUGCAUGCCGUCCCGGACGCACUUCCUACU-CGAACUUUCUAGCGCUCCUGUCGCCCCCUU-GCGACACGGCUUUCCCAAGCUCGACGCUUU (((...((((((.......)))))).........(((((...((((((..........-...........))).))).(((((......-))))))))))...)))((((.....)))). ( -36.40) >pf5.3611 6800378 117 - 7074893 GGCCCCGCACUGGUUUCUCCAUUGCCCCCUGCAAGCCGUCGCCGACGCUCUCCU--UUUCGAAUUAGUACGCGAUCCUGUCGCCUUCUCUGCGGCGCGGCCUCAUUAAGCCAAAAGCUU- (((...(((.(((.....))).))).........((((.(((((.((((.((..--....))...)))..(((((...))))).......))))))))))........)))........- ( -32.30) >pfo.3225 6124493 117 - 6438405 GGCCCCGCACUGGUUUCUCCACUGCCCCCUGCUAGCCGUCGCCGACGCACUCCU--UUUCGAAUAAGUACGCGAUCCUGUCGCCUUCUCCGCGGCGCGGCCUCAUUAAGCCAAAAGCUU- (((...(((.(((.....))).))).........((((.(((((.((.....((--(.......)))...(((((...)))))......)))))))))))........)))........- ( -33.60) >ppk.3041 5948500 116 - 6181863 GGCCUCGCACUG-CUUUUCCAGUGCCCUCUACAUGCCGUCGCCGAAGCAUCCCUAAUU-CGAAUCAGUACGCGAUCCUGUCGCCAUCCA-GCGGCGCGGCCUCAUUAAGCCAGAAGCUU- ((((..((((((-......)))))).........((.(((((((((..........))-)).........(((((...)))))......-))))))))))).....((((.....))))- ( -34.00) >pel.3074 5652629 117 - 5888780 GGCCUCGCACUGACCCUUUCAGUGCCCUCUGCACGCCGUCGCCGAAGCAUCCCUAAUU-CGAAUCAGUACGCGAUCUUGUCGCCAUCUA-GCGGCGCGGCCUCAUUAAGCCAAAUGCUU- ((((..(((((((.....)))))))........((((((...((((..........))-))....((...(((((...)))))...)).-)))))).)))).....((((.....))))- ( -36.00) >pst.3116 5962949 116 - 6397126 GGCCCCGCAACGGCUUCUCCGUUGCCCCCUGCUAGCCGUCGCCGACGCUCUCCU--UU-CGAUUUAGUACGCGAUCCUGUCGCCUUUUCUGCGGCGCGGCCUCAUUAAGCCAAAAGCUU- (((...(((((((.....))))))).........((((.(((((.((((.((..--..-.))...)))..(((((...))))).......))))))))))........)))........- ( -36.20) >consensus GGCCCCGCACUGGCUUCUCCAUUGCCCCCUGCAAGCCGUCGCCGACGCACUCCU__UU_CGAAUUAGUACGCGAUCCUGUCGCCUUCUC_GCGGCGCGGCCUCAUUAAGCCAAAAGCUU_ (((...(((((((.....))))))).........((((.(((((..((..................))..(((((...)))))........)))))))))........)))......... (-27.84 = -28.29 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:16:00 2007