Locus 153

Sequence ID pao.2779
Location 5,264,287 – 5,264,380
Length 93
Max. P 0.998815
window649

overview

Window 9

Location 5,264,287 – 5,264,380
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 68.10
Mean single sequence MFE -31.75
Consensus MFE -13.11
Energy contribution -14.69
Covariance contribution 1.59
Combinations/Pair 1.32
Mean z-score -3.21
Structure conservation index 0.41
SVM decision value 3.24
SVM RNA-class probability 0.998815
Prediction RNA

Download alignment: ClustalW | MAF

>pao.2779 5264287 93 - 6264404
CCCGUGAGGCUUGACCAUAUAACACCCAAACAAUCUGACGAUU-----------------------GUGUGUUGUAAGGUGAAGUCGAC--GAACCGAAAGUUCGCAUGAACCGC--AAA
...(((.(((((.(((.((((((((....((((((....))))-----------------------)))))))))).))).)))))(.(--(((.(....))))))......)))--... ( -33.20)
>pau.2917 5536220 92 - 6537648
CCCGUGAGGCUUGACCAUAUAACACCCAAACAAUCUGACGAUU-----------------------GUGUGUUGUAAGGUGAAGUCGAC--GAACCGAAAGUUCGCAUGAACCGC---AA
...(((.(((((.(((.((((((((....((((((....))))-----------------------)))))))))).))).)))))(.(--(((.(....))))))......)))---.. ( -33.20)
>ppk.656 4851580 94 + 6181863
CCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUCUGC--------------------UACGCAGAUUGUGGUG----GUGAAGACGAAA-GACCCGAAAAUUCGUGCUUUACACA-AGA
.((....))((((.........((((...(((((((((--------------------...)))))))))))))----(((((((((((.-..........))))).)))))).))-)). ( -33.00)
>pel.714 4508255 87 + 5888780
CCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUCUGCACAUG---------------AACGCAGAUUGUGGUG----GUGAAGACGAAA-GAACCGAAAGUUCGC-------------A
.((....)).............((((...(((((((((.....---------------...)))))))))))))----(((((..(....-)...(....))))))-------------. ( -28.30)
>pf5.2519 4810160 89 - 7074893
CCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUUUGCUUAAG----------------AAGCGAGUUGCGGUGU---GUGAAGACGAUACAAACCGAAAGUUUG------------CGA
.((....))(((.((......(((((...((((((((((....----------------.)))))))))))))))---)).)))......((((.(....)))))------------... ( -26.30)
>pfo.2296 4416700 113 - 6438405
CCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUUUGCGUCGGCUCUCUAAACCAGAGCAACCAGAUUGCGGUGU---GUGAAGACGCAAUGAACCGAAAGUUCGA----UGCUCACAAA
.((....))............(((((...((((((((.((..(((((.......))))).)))))))))))))))---((((....(((.((((.(....))))).----)))))))... ( -36.50)
>consensus
CCCGUGAGGCUUGACCAUAUAACACCCAAGCAAUCUGCCGAUG________________A_GCAGAUUGUGGUGU___GUGAAGACGAAA_GAACCGAAAGUUCGC______C_C__AAA
.((....))......(((...(((((...((((((((.........................)))))))))))))...)))..........((((.....))))................ (-13.11 = -14.69 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:59 2007