Locus 152

Sequence ID	pao.2779
Location	5,264,052 – 5,264,169
Length	117
Max. P	0.918886

overview

Window 7

Location	5,264,052 – 5,264,169
Length	117
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	81.71
Mean single sequence MFE	-38.74
Consensus MFE	-18.59
Energy contribution	-18.68
Covariance contribution	0.09
Combinations/Pair	1.17
Mean z-score	-2.91
Structure conservation index	0.48
SVM decision value	0.38
SVM RNA-class probability	0.714730
Prediction	RNA

Download alignment: ClustalW | MAF

>pao.2779 5264052 117 + 6264404
CGCAAAAGC-AAAACCCCCGGU-CAUCGCU-GACCAGGGGUUUUGGGAUAGGAGCUUGACGAUGACCUACUCUCACAUGGGGAGACCCCACACUACCAUCGGCGAUGCGUCGUUUCACUU
((((...((-((((((((.(((-((....)-)))).))))))))((((((((..(........).)))).))))....(((....))).............))..))))........... ( -40.00)
>pau.2917 5535985 117 + 6537648
CGCAAAAGC-AAAACCCCCGGC-CAUCGCU-GACCAGGGGUUUUGGGAUAGGAGCUUGACGAUGACCUACUCUCACAUGGGGAGACCCCACACUACCAUCGGCGAUGCGUCGUUUCACUU
.((....))-........((((-(((((((-((....((....(((((((((..(........).)))).)))))...(((....))).......)).))))))))).))))........ ( -37.30)
>pfo.3002 5726293 116 + 6438405
GGCAAAA-C-AAAACCCCAACUGCUUUCGC-AAUUGGGGUUUC-GGAAUUUGAUCUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUGCAUCGUUUCACUU
((((((.-(-.(((((((((.(((....))-).))))))))).-)...)))).))..(((((((..............(((....)))........((((...)))))))))))...... ( -34.20)
>pf5.3378 6382699 117 + 7074893
CGCAAAAAC-AAAACCCCAACUGCAUGCGC-AGUUGGGGUUUC-GGAAUUUAAUCUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUGCAUCGUUUCACUU
........(-.(((((((((((((....))-))))))))))).-)............(((((((..............(((....)))........((((...)))))))))))...... ( -39.10)
>pst.2031 3869387 119 + 6397126
CAUAAAAACAAAAACCCUCGACGCGUAAGC-GAUGAGGGUUUUUGGAAUUUAAUCUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUACAUCGUUUCACUG
........((((((((((((.(((....))-).))))))))))))............(((((((..............(((....)))..(.((......)).)...)))))))...... ( -40.00)
>pel.69 5768079 115 - 5888780
-----AGACAAAACCCCUACCUGCAUGCGCAGAUAGGGGUUUUGCGAAAUGAAUCUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUGCAUCGUUUCACUG
-----.(.(((((((((((.((((....)))).))))))))))))(((((((...(((.(((((..............(((....)))........))))).)))....))))))).... ( -41.85)
>consensus
CGCAAAAAC_AAAACCCCAGCUGCAUCCGC_GAUCAGGGUUUUUGGAAUUGAAUCUUGACGAUGACCUACUCUCACAUGGGGAAACCCCACACUACCAUCGGCGAUGCAUCGUUUCACUU
..............((((.................))))..................(((((((..............(((....)))........((((...)))))))))))...... (-18.59 = -18.68 +   0.09)

alignment

secondary structure

dotplot

Window 8

Location	5,264,052 – 5,264,169
Length	117
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	81.71
Mean single sequence MFE	-47.97
Consensus MFE	-23.28
Energy contribution	-24.23
Covariance contribution	0.95
Combinations/Pair	1.17
Mean z-score	-3.64
Structure conservation index	0.49
SVM decision value	1.12
SVM RNA-class probability	0.918886
Prediction	RNA

Download alignment: ClustalW | MAF

>pao.2779 5264052 117 - 6264404
AAGUGAAACGACGCAUCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGUCAUCGUCAAGCUCCUAUCCCAAAACCCCUGGUC-AGCGAUG-ACCGGGGGUUUU-GCUUUUGCG
..(..(((.((((.((.(((.((....(..(((((...)))))..)....)).))).))))))............((((((((((((((-(....))-))))))))))))-).)))..). ( -49.70)
>pau.2917 5535985 117 - 6537648
AAGUGAAACGACGCAUCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGUCAUCGUCAAGCUCCUAUCCCAAAACCCCUGGUC-AGCGAUG-GCCGGGGGUUUU-GCUUUUGCG
..(..(((.((((.((.(((.((....(..(((((...)))))..)....)).))).))))))............((((((((((((((-(....))-))))))))))))-).)))..). ( -49.10)
>pfo.3002 5726293 116 - 6438405
AAGUGAAACGAUGCAUCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGUCAUCGUCAAGAUCAAAUUCC-GAAACCCCAAUU-GCGAAAGCAGUUGGGGUUUU-G-UUUUGCC
..(..((((((((.((.(((.((....(..(((((...)))))..)....)).))).)))))).............-((((((((((((-((....))))))))))))))-)-)))..). ( -50.00)
>pf5.3378 6382699 117 - 7074893
AAGUGAAACGAUGCAUCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGUCAUCGUCAAGAUUAAAUUCC-GAAACCCCAACU-GCGCAUGCAGUUGGGGUUUU-GUUUUUGCG
..(..((((((((....(((.((....(..(((((...)))))..)....)).))))))))).............(-((((((((((((-((....))))))))))))))-)..))..). ( -47.40)
>pst.2031 3869387 119 - 6397126
CAGUGAAACGAUGUAUCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGUCAUCGUCAAGAUUAAAUUCCAAAAACCCUCAUC-GCUUACGCGUCGAGGGUUUUUGUUUUUAUG
..(((((((((((....(((.((....(..(((((...)))))..)....)).))))))))).............(((((((((((..(-((....)))..)))))))))))..))))). ( -41.50)
>pel.69 5768079 115 + 5888780
CAGUGAAACGAUGCAUCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGUCAUCGUCAAGAUUCAUUUCGCAAAACCCCUAUCUGCGCAUGCAGGUAGGGGUUUUGUCU-----
.((((((((((((....(((.((....(..(((((...)))))..)....)).))))))))).....))))))..(((((((((((((((((....)))))))))))))))))..----- ( -50.10)
>consensus
AAGUGAAACGAUGCAUCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGUCAUCGUCAAGAUCAAAUUCCAAAAACCCCAAUC_GCGCAUGCAGCGGGGGUUUU_GUUUUUGCG
..((((((.((((.((.(((.((....(..(((((...)))))..)....)).))).))))))..................((((.....((....))....)))).......)))))). (-23.28 = -24.23 +   0.95)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:58 2007