Locus 150

Sequence ID pao.1067
Location 1,920,474 – 1,920,567
Length 93
Max. P 0.731145
window644

overview

Window 4

Location 1,920,474 – 1,920,567
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 77.54
Mean single sequence MFE -33.63
Consensus MFE -23.38
Energy contribution -21.50
Covariance contribution -1.88
Combinations/Pair 1.26
Mean z-score -1.54
Structure conservation index 0.70
SVM decision value 0.42
SVM RNA-class probability 0.731145
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1067 1920474 93 - 6264404
GUGGAACAGCUCCGAGUGCGCACGCUCGACCAGCUCUUCAUCGGAAAGCUGGCGUGGGUCAUACCGCUGUGACAGGGGGUGAGGCUUAUUCAA
..(((.....)))(((((....)))))(.((((((.(((....))))))))))(((((((.((((.((......)).)))).))))))).... ( -32.50)
>psp.1247 2422549 90 - 5928787
---GAAUAGCUCAACAUUGGCGCGCGCGACCAGCUCCUCAUCAGAGAGCUCGCGGGGAUCGUAGCGCGUCGAAAACGGUUGAGGUUUAUUCAA
---((((((((((((.((((((((((((((((((((.((....))))))).....)).)))).))))))))).....))))))..)))))).. ( -37.80)
>pst.1393 2542140 90 - 6397126
---GAAAAGCUCGACGUGGGCCCGCGCGACCAGCUCCUCAUCAGAGAGCUCGCGGGGAUCGUAACGCGUCAAAAACGGUUGAGGUUUAUUCAA
---..(((.((((((..(..(((.(((((...((((.((....))))))))))))))..)......(((.....))))))))).)))...... ( -30.60)
>consensus
___GAAAAGCUCAACGUGGGCACGCGCGACCAGCUCCUCAUCAGAGAGCUCGCGGGGAUCGUAACGCGUCGAAAACGGUUGAGGUUUAUUCAA
...(((..............((((((.....((((.(((....)))))))))))))((((.((((.(((.....))))))).))))..))).. (-23.38 = -21.50 +  -1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:53 2007