| Sequence ID | pao.1556 |
|---|---|
| Location | 2,967,050 – 2,967,160 |
| Length | 110 |
| Max. P | 0.671497 |
| Location | 2,967,050 – 2,967,160 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 71.82 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -22.55 |
| Energy contribution | -21.34 |
| Covariance contribution | -1.22 |
| Combinations/Pair | 1.45 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1556 2967050 110 + 6264404 C-CCGCG-GCAUAUCUCGAUUUC-GAUUCA--ACCCGAUGUUGAGCGAAGGCAUCGCGUCCACCA-ACGCGUAUCGAGACUCUGUGCGCGC-CCAGCAAAAA--AGAGAGUUACCGUAG .-..(((-(....((((((((((-(.((((--((.....)))))))))))....(((((......-)))))..))))))((((.(((....-...)))....--)))).....)))).. ( -35.20) >psp.1817 3597115 104 + 5928787 CACCGCGAAUGAACCUCGACCUG-GGCCCAUGGCCGAACCGUGGGCAAG-----AGUGCAUACCCUGCGCGUAUCGAGAUUUUGUGCAUGC-UCAGCAAAAC--AGAGAGUUA------ ....(((...(((.(((((.((.-.((((((((.....)))))))).))-----.(((((.....)))))...))))).)))..)))..((-((........--...))))..------ ( -34.70) >pss.1904 3814443 101 + 6093698 CACCGCGAAUAAACCUCGACCU--GGCUCAUGGCCGAACCGUGGGCAAG-----CGCGCCUACAAUGCGCGUAUCGAGAUUUUGUGCAUGC-UCAGCAAA----AGAGAGUUA------ ....(((...(((.(((((...--.((((((((.....))))))))..(-----(((((.......)))))).))))).)))..)))..((-((......----...))))..------ ( -34.40) >pf5.2359 4487975 106 + 7074893 CACCGCGAAGAAACCUCGACAUUCGGCUCAUGGAUGACCUUUGAACGAA-----AGCGCUUACCCGGCGCACCUCGAGUUUCUGCGCACGCUUUAGCAAAGA--AGAGAGUUA------ ....(((.((((((.((((..((((..(((.((....))..))).))))-----.(((((.....)))))...)))))))))).)))..((....)).....--.........------ ( -31.60) >pfo.2109 4061886 106 + 6438405 CACCGCGAAG-AUUCUCGACAUUCGGUUCAUGGAUGA-CUUUGAACGAA-----CGCGCUUACCCGGCGCCCCUCGAGUUUCUGCGCACGCUUUAGCAAAGAAGAGAGAGUUA------ ....(((.((-(..(((((..((((.((((.((....-)).))))))))-----.(((((.....)))))...)))))..))).)))..(((((..(......)..)))))..------ ( -31.40) >pst.1997 3792968 104 + 6397126 CACCGCGAAUAAACCUCGACCUG-GGCUCAUGGCCGAACCGUGGGCAAG-----AGUGCAUACCCUGCGCGUAUCGAGAUUUUGUGCAUGC-UCAGCAAAAC--AGAGAGUUA------ ....(((...(((.(((((.((.-.((((((((.....)))))))).))-----.(((((.....)))))...))))).)))..)))..((-((........--...))))..------ ( -31.30) >consensus CACCGCGAAUAAACCUCGACCUG_GGCUCAUGGCCGAACCGUGAGCAAA_____AGCGCAUACCCUGCGCGUAUCGAGAUUCUGUGCACGC_UCAGCAAAAA__AGAGAGUUA______ ....(((.......(((((......(((((.((.....)).))))).........(((((.....)))))...)))))......)))..((....))...................... (-22.55 = -21.34 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:52 2007