Locus 148

Sequence ID pao.1089
Location 1,958,623 – 1,958,731
Length 108
Max. P 0.950136
window642

overview

Window 2

Location 1,958,623 – 1,958,731
Length 108
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 79.43
Mean single sequence MFE -31.78
Consensus MFE -18.56
Energy contribution -19.17
Covariance contribution 0.61
Combinations/Pair 1.26
Mean z-score -2.67
Structure conservation index 0.58
SVM decision value 1.40
SVM RNA-class probability 0.950136
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1089 1958623 108 + 6264404
UCGGUAGGUAUUCUUGACACUGUUUUUGGGCCCUUGUUAUAAAGCGGCACUUG-----CUGAGUCAGUUGGCCUACCAGCGCAGAAUUU-CCUUACACCUAACA-CAUAGAAACA
..((((((.(((((((((.(.((....((((((((......))).))).)).)-----).).))))(((((....)))))..)))))..-)))...))).....-.......... ( -26.30)
>pfo.2164 2256608 106 - 6438405
--GG-GGGCUUCCUUGACAGCUUUUUAGAGCCCUUGUUAUAAAGCGGCUCUU------AAGUGUCUGUAGGCCAUUCAGCACUCGUUUUUGCUUUCACCAAAAAACUUAGAAUCA
--.(-((((((.(..((((.(((...(((((((((......))).)))))).------))))))).).)))))....((((........))))....))................ ( -30.30)
>pst.2207 2192897 112 - 6397126
--GGCAGGCUUCCUUGACAGCUUUUUAGAGCCCUUGUUAUAAAGCGGCUCUUCAAAGCAAUCACCAGCAAGCCUUCCAGCGCUCGUUUUGCUUAACACCUAAAA-CUUAGAAACA
--((.((((((.(((((..(((((..(((((((((......))).))))))..)))))..)))..)).)))))).)).......((((((.........)))))-)......... ( -34.00)
>pf5.2417 2473105 106 - 7074893
--GG-GGGCUUCCUUGACAGCUUUUUAGAGCCCUUGUUAUAAAGCGGCUCUU------AAGUGUCUGUAGGCCAUUCAGCACUCGUUUUUGCUUUCACCAAAAAACUUAGAAUCA
--.(-((((((.(..((((.(((...(((((((((......))).)))))).------))))))).).)))))....((((........))))....))................ ( -30.30)
>pss.1037 1989423 112 + 6093698
--GGCAGGCUUCCUUGACAGCUUUUUGGAGCCCUUGUUAUAAAGCGGCUCUUUAAAGCAAUCACCGGCAAGCCUUCCAGCGCUCGUUUUGCUUAACACCUAAAA-CUUAGAAACA
--((.((((((((.(((..(((((..(((((((((......))).))))))..)))))..)))..)).)))))).)).......((((((.........)))))-)......... ( -36.50)
>psp.1011 1966848 112 + 5928787
--GGUAGGCUUCCUUGACAGCUUUUUAGAGCCCUUGUUAUAAAGCGGCUCUUUAAAGCAAGCACCAGCAAGCCUUCCAGCGCUCGUUUUGCUUAACACCUAAAA-CUUAGAAACA
--((.((((((.((((...(((((..(((((((((......))).))))))..)))))...))..)).)))))).)).......((((((.........)))))-)......... ( -33.30)
>consensus
__GG_AGGCUUCCUUGACAGCUUUUUAGAGCCCUUGUUAUAAAGCGGCUCUU______AAGCACCAGCAAGCCUUCCAGCGCUCGUUUUGCCUAACACCUAAAA_CUUAGAAACA
..((.((((((.((............(((((((((......))).))))))..............)).)))))).))...................................... (-18.56 = -19.17 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:51 2007