Locus 147

Sequence ID pao.1746
Location 3,265,518 – 3,265,600
Length 82
Max. P 0.957475
window640 window641

overview

Window 0

Location 3,265,518 – 3,265,600
Length 82
Sequences 4
Columns 83
Reading direction forward
Mean pairwise identity 81.69
Mean single sequence MFE -36.70
Consensus MFE -28.35
Energy contribution -28.97
Covariance contribution 0.62
Combinations/Pair 1.31
Mean z-score -1.96
Structure conservation index 0.77
SVM decision value 0.97
SVM RNA-class probability 0.892740
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1746 3265518 82 + 6264404
CUUGACUGGAAACGGUGCGGAUGUUCCCAU-CCGGCCCGUUCCAGGUGCCUCCUGCCGCCGCGCAGGAGGUGAAACGGGAAGC
((((.((((((.(((..((((((....)))-)))..)))))))))..(((((((((......)))))))))....)))).... ( -42.10)
>pau.1248 4233809 82 - 6537648
CUUGACUGGAAACGGUGCGGAUGUUCCCAU-CCGGCCCGUUCCAGGUGCCUCCUGCCGCCGCGCAGGAGGUGAAACGGGAAGC
((((.((((((.(((..((((((....)))-)))..)))))))))..(((((((((......)))))))))....)))).... ( -42.10)
>pel.1484 2693817 83 + 5888780
CUUGACGCGCACCGCACCGAAUGUUCACAUGCCGCCCAGUUUCAGGUGCCCCAAGUCGCCGCGCUUGGGGUGAAACGGGAAAC
......(((...)))..((.(((....)))..))(((.(((((....(((((((((......))))))))))))))))).... ( -26.80)
>pf5.1354 4569939 83 - 7074893
GUUGACGAACGCCGGGGCGGAUGUUCAUAUGCCGCCCAGUUUCAGGUGCCUCCUGCCGCCGUGCAGGAGGUGAAACGGGAAAC
...........((.(((((((((....))).)))))).(((((....(((((((((......))))))))))))))))..... ( -35.80)
>consensus
CUUGACGGGAAACGGUGCGGAUGUUCACAU_CCGCCCAGUUCCAGGUGCCUCCUGCCGCCGCGCAGGAGGUGAAACGGGAAAC
((((.(((((((.(((.((((((....))).)))))).)))))))..(((((((((......)))))))))....)))).... (-28.35 = -28.97 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 3,265,518 – 3,265,600
Length 82
Sequences 4
Columns 83
Reading direction reverse
Mean pairwise identity 81.69
Mean single sequence MFE -36.67
Consensus MFE -29.66
Energy contribution -29.10
Covariance contribution -0.56
Combinations/Pair 1.22
Mean z-score -2.16
Structure conservation index 0.81
SVM decision value 1.48
SVM RNA-class probability 0.957475
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1746 3265518 82 - 6264404
GCUUCCCGUUUCACCUCCUGCGCGGCGGCAGGAGGCACCUGGAACGGGCCGG-AUGGGAACAUCCGCACCGUUUCCAGUCAAG
.............((((((((......))))))))...(((((((((..(((-(((....))))))..))).))))))..... ( -41.00)
>pau.1248 4233809 82 + 6537648
GCUUCCCGUUUCACCUCCUGCGCGGCGGCAGGAGGCACCUGGAACGGGCCGG-AUGGGAACAUCCGCACCGUUUCCAGUCAAG
.............((((((((......))))))))...(((((((((..(((-(((....))))))..))).))))))..... ( -41.00)
>pel.1484 2693817 83 - 5888780
GUUUCCCGUUUCACCCCAAGCGCGGCGACUUGGGGCACCUGAAACUGGGCGGCAUGUGAACAUUCGGUGCGGUGCGCGUCAAG
((..((((((((((((((((((...)).)))))))....)))))).)))..))(((....)))..(..(((...)))..)... ( -30.40)
>pf5.1354 4569939 83 + 7074893
GUUUCCCGUUUCACCUCCUGCACGGCGGCAGGAGGCACCUGAAACUGGGCGGCAUAUGAACAUCCGCCCCGGCGUUCGUCAAC
((..(((((((((((((((((......))))))))....)))))).)))..))..((((((..(((...))).)))))).... ( -34.30)
>consensus
GCUUCCCGUUUCACCUCCUGCGCGGCGGCAGGAGGCACCUGAAACGGGCCGG_AUGGGAACAUCCGCACCGGUGCCAGUCAAG
....(((((((((((((((((......))))))))....))))))))).(((.(((....))))))................. (-29.66 = -29.10 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:49 2007