| Sequence ID | pao.558 |
|---|---|
| Location | 986,765 – 986,817 |
| Length | 52 |
| Max. P | 0.995769 |
| Location | 986,765 – 986,817 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 83 |
| Reading direction | reverse |
| Mean pairwise identity | 70.33 |
| Mean single sequence MFE | -27.05 |
| Consensus MFE | -14.40 |
| Energy contribution | -14.90 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.53 |
| SVM decision value | 2.61 |
| SVM RNA-class probability | 0.995769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.558 986765 52 - 6264404 AGGUUCUUCCACGGAAAAUUGGCGGCCA-------------------------------CGAAUCGCCGGCAAAGGGCCGCAU .((((((((....)))..(((.((((..-------------------------------......)))).))).))))).... ( -17.60) >psp.2050 1877783 74 + 5928787 -GGUUCUUCCACGGAGA--CUGCGGCCAGAGGCAAGUGC------AAAACGUCAAAUGACGUAGCGACGGCAAAGGGCCGCAU -((.....))..(....--)(((((((....((...(((------...(((((....))))).)))...))....))))))). ( -29.90) >pel.2219 1727513 62 + 5888780 -GGUUCUUCCACGGAAA--CGGCGGCCA--------CAC------GUCGAAUC----GACGAAACGACGGCAAAGGGCCGCAU -((.....)).((....--))((((((.--------...------((((..((----(......)))))))....)))))).. ( -24.80) >ppk.2580 1097531 67 + 6181863 --GUUCUUCCACGGAAA--CGGCGGCCC--------UGUUGGGCAAACGCGUC----GACGAAACGACGGCAAAGGGCCGCAU --.........((....--))(((((((--------((((.....)))(((((----(......)))).))..)))))))).. ( -30.10) >pf5.2745 1856574 74 + 7074893 -GGUUCUUCCACGGAGA--CUGCGGCCAAAGGCCUGUGC------GCAACGUCAACAGACGAAACGACGGCAAAGGGCCGCAU -((.....))..(....--)(((((((....(((.((.(------(...((((....))))...)))))))....))))))). ( -29.60) >pfo.2518 1612822 74 + 6438405 -GGUUCUUCCACGGAGG--CUGCGGCCAAAGGCCUGUAC------GAAACGUCAACAGACGAAACGACGGCAAAGGGCCGCAU -....((((....))))--.(((((((....(((.((.(------(...((((....))))...)))))))....))))))). ( -30.30) >consensus _GGUUCUUCCACGGAAA__CGGCGGCCA________UGC______GAAACGUC____GACGAAACGACGGCAAAGGGCCGCAU ......(((....))).....((((((......................((((....))))......(......))))))).. (-14.40 = -14.90 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:45 2007