| Sequence ID | pao.2828 |
|---|---|
| Location | 5,352,707 – 5,352,774 |
| Length | 67 |
| Max. P | 0.974082 |
| Location | 5,352,707 – 5,352,774 |
|---|---|
| Length | 67 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 59.87 |
| Mean single sequence MFE | -28.28 |
| Consensus MFE | -25.39 |
| Energy contribution | -25.00 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.15 |
| Mean z-score | -5.43 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.974082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2828 5352707 67 + 6264404 CGGCUGGCGUUCCACGAAAAAGCCCGGCAUUC--GCCGGGCUUUUUCAUUUCCGCAGGAA-----ACCCCUCGG ....(((....))).(((((((((((((....--)))))))))))))....(((.(((..-----...)))))) ( -31.20) >pau.2966 5624638 61 + 6537648 --GCUGGCGUUCCACGAAAAAGCCCGGCAUUC--GCCGGGCUUUUUCAUUUCCGCAGGAA-----CCCCC---- --...((.(((((..(((((((((((((....--))))))))))))).(......)))))-----)))..---- ( -30.10) >psp.2208 4332245 50 + 5928787 ---------------GAAGAAGCCCGGCUCAU--GCCGGGCUUUUUCAUUUGGCUCUGAA-----AGAACUC-- ---------------(((((((((((((....--))))))))))))).............-----.......-- ( -25.40) >pst.2365 4494199 55 + 6397126 ---------------GAAGAAGCCCGGCGCAU--GCCGGGCUUCUUCAUUUUCAUCAAGACCUGAAAUACCC-- ---------------(((((((((((((....--)))))))))))))..(((((........))))).....-- ( -28.40) >ppk.686 4796700 52 - 6181863 ---------------GAAAAAGCCCGGCAAUCACGCCGGGCUUUUUCUUGGCUGACAAGU-----GUCACGC-- ---------------(((((((((((((......)))))))))))))...((((((....-----)))).))-- ( -29.10) >pss.838 4507101 50 - 6093698 ---------------GAAGAAGCCCGGCACAU--GCCGGGCUUUUUCAUGCCCCCAAGAA-----AGCACUC-- ---------------(((((((((((((....--))))))))))))).(((.........-----.)))...-- ( -25.50) >consensus _______________GAAAAAGCCCGGCACAC__GCCGGGCUUUUUCAUUUCCGCAAGAA_____ACCACUC__ ...............(((((((((((((......)))))))))))))........................... (-25.39 = -25.00 + -0.39)
| Location | 5,352,707 – 5,352,774 |
|---|---|
| Length | 67 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 59.87 |
| Mean single sequence MFE | -29.48 |
| Consensus MFE | -22.27 |
| Energy contribution | -22.43 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.08 |
| Mean z-score | -4.92 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.911708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2828 5352707 67 - 6264404 CCGAGGGGU-----UUCCUGCGGAAAUGAAAAAGCCCGGC--GAAUGCCGGGCUUUUUCGUGGAACGCCAGCCG ......(((-----(....(((...(((((((((((((((--....)))))))))))))))....))).)))). ( -34.20) >pau.2966 5624638 61 - 6537648 ----GGGGG-----UUCCUGCGGAAAUGAAAAAGCCCGGC--GAAUGCCGGGCUUUUUCGUGGAACGCCAGC-- ----.((.(-----((((.......(((((((((((((((--....)))))))))))))))))))).))...-- ( -35.91) >psp.2208 4332245 50 - 5928787 --GAGUUCU-----UUCAGAGCCAAAUGAAAAAGCCCGGC--AUGAGCCGGGCUUCUUC--------------- --(.((((.-----....)))))....(((.(((((((((--....))))))))).)))--------------- ( -22.40) >pst.2365 4494199 55 - 6397126 --GGGUAUUUCAGGUCUUGAUGAAAAUGAAGAAGCCCGGC--AUGCGCCGGGCUUCUUC--------------- --.....(((((........)))))..(((((((((((((--....)))))))))))))--------------- ( -28.20) >ppk.686 4796700 52 + 6181863 --GCGUGAC-----ACUUGUCAGCCAAGAAAAAGCCCGGCGUGAUUGCCGGGCUUUUUC--------------- --((.((((-----....))))))...((((((((((((((....))))))))))))))--------------- ( -29.70) >pss.838 4507101 50 + 6093698 --GAGUGCU-----UUCUUGGGGGCAUGAAAAAGCCCGGC--AUGUGCCGGGCUUCUUC--------------- --..(((((-----((....)))))))(((.(((((((((--....))))))))).)))--------------- ( -26.50) >consensus __GAGUGCU_____UUCUGGCGGAAAUGAAAAAGCCCGGC__AAGUGCCGGGCUUCUUC_______________ ...........................(((((((((((((......)))))))))))))............... (-22.27 = -22.43 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:43 2007