| Sequence ID | pao.1605 |
|---|---|
| Location | 3,061,612 – 3,061,732 |
| Length | 120 |
| Max. P | 0.781261 |
| Location | 3,061,612 – 3,061,720 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 63.32 |
| Mean single sequence MFE | -41.25 |
| Consensus MFE | -18.22 |
| Energy contribution | -18.20 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1605 3061612 108 + 6264404 CAGUUCAGUAUUGUUUGAAAA------------CCCGACUAUAACGCGGGGACAAGCGCACUGUGAACGCAGACGGGUCAUUCAGUCACUGAAUGCCCGGCCACCUCGCGACCCGCCGUU ...(((((......)))))..------------.........((((((((......(((.((((....)))).((((.(((((((...)))))))))))........))).)))).)))) ( -36.00) >pau.1404 4017292 108 - 6537648 CAGUUCAGUAUUGUUUGAAAA------------CCCGACUAUAACGCGGGGACAAGCGCACUGUGAACGCAGACGGGUCAUUCAGUCACUGAAUGCCCGGCCACCUCGCGACCCGCCGUU ...(((((......)))))..------------.........((((((((......(((.((((....)))).((((.(((((((...)))))))))))........))).)))).)))) ( -36.00) >pfo.792 1581116 110 + 6438405 CAGGGCG-------GGGGCGAAAUAAUCGGAUGCCCGACUAUAACGCGCGGCCCGGUCGACUGUGAACGCAGACGGCUUAUUCAGUCUCUGAAUGGGGCGUCACAUGUUGAC--UCAGU- ..((((.-------.(.(((..(((.((((....)))).)))..))).).))))((((((((((....)))((((.(((((((((...))))))))).))))....))))))--)....- ( -46.00) >pf5.905 1701007 103 + 7074893 CAGGUCGAUUGAAUGGGGAGUGAUG-------GCGCGACUAUAACGCGCUGCCCGGUCGACUGUGAACGUGGACGCCCCAUUCAGUCUCUGAAUGGAGCGUCACGGGGUG---------- ..((((((((.....(((......(-------(((((.......)))))).))))))))))).....((((.((((.((((((((...)))))))).)))))))).....---------- ( -43.70) >psp.937 1815322 108 + 5928787 CACACCGUAACAGGGGCAAGCAAUG-------CCGGAACUAUAACGUGGCUGCCGGACGGCUGUGAACGCAGACGCCUCAUUCAGUUCUUGAAUGGGGCGUCACGCAGUG----ACCGG- ....((......))((((.....))-------))((.(((....((..((((.....))))..))...((.((((((((((((((...))))))))))))))..))))).----.))..- ( -42.80) >pss.935 1775763 108 + 6093698 CACGCCGUAAGAGGGGCAAGCAAUG-------CCCUGACUAUAACGUGGCGGCCCGCUGGCUGUGAACGAAGACGCCUCAUUCAGUUCUUGAAUGGCGCGUCACGCUGUG----ACCGG- ((((.(((.((.((((((.....))-------))))..))....(((.((((((....))))))..)))..(((((.((((((((...)))))))).)))))))).))))----.....- ( -43.00) >consensus CAGGUCGGUAGAGUGGGAAGAAAUG________CCCGACUAUAACGCGGGGACCGGCCGACUGUGAACGCAGACGCCUCAUUCAGUCACUGAAUGGCGCGUCACGUCGUG____ACCGU_ ............................................(((.(((..........(((....)))((((((((((((((...)))))))))))))).))).))).......... (-18.22 = -18.20 + -0.02)
| Location | 3,061,624 – 3,061,732 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 61.63 |
| Mean single sequence MFE | -38.32 |
| Consensus MFE | -18.22 |
| Energy contribution | -18.20 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1605 3061624 108 + 6264404 GUUUGAAAA------------CCCGACUAUAACGCGGGGACAAGCGCACUGUGAACGCAGACGGGUCAUUCAGUCACUGAAUGCCCGGCCACCUCGCGACCCGCCGUUCCGCCCGCGUCU .........------------...(((.....(((((((....((...((((....)))).((((.(((((((...)))))))))))))..)))))))....((.(......).))))). ( -37.10) >pau.1404 4017304 108 - 6537648 GUUUGAAAA------------CCCGACUAUAACGCGGGGACAAGCGCACUGUGAACGCAGACGGGUCAUUCAGUCACUGAAUGCCCGGCCACCUCGCGACCCGCCGUUCCGCCCGCGUCU .........------------...(((.....(((((((....((...((((....)))).((((.(((((((...)))))))))))))..)))))))....((.(......).))))). ( -37.10) >pfo.792 1581123 103 + 6438405 --GGGGCGAAAUAAUCGGAUGCCCGACUAUAACGCGCGGCCCGGUCGACUGUGAACGCAGACGGCUUAUUCAGUCUCUGAAUGGGGCGUCACAUGUUGAC--UCAGU------------- --(((.((..(((.((((....)))).)))......)).)))((((((((((....)))((((.(((((((((...))))))))).))))....))))))--)....------------- ( -39.80) >pf5.905 1701019 91 + 7074893 AUGGGGAGUGAUG-------GCGCGACUAUAACGCGCUGCCCGGUCGACUGUGAACGUGGACGCCCCAUUCAGUCUCUGAAUGGAGCGUCACGGGGUG---------------------- ............(-------(((((.......))))))((((..(((....))).((((.((((.((((((((...)))))))).)))))))))))).---------------------- ( -38.00) >psp.937 1815334 96 + 5928787 GGGGCAAGCAAUG-------CCGGAACUAUAACGUGGCUGCCGGACGGCUGUGAACGCAGACGCCUCAUUCAGUUCUUGAAUGGGGCGUCACGCAGUG----ACCGG------------- ..((((.....))-------))((.(((....((..((((.....))))..))...((.((((((((((((((...))))))))))))))..))))).----.))..------------- ( -40.90) >pss.935 1775775 96 + 6093698 GGGGCAAGCAAUG-------CCCUGACUAUAACGUGGCGGCCCGCUGGCUGUGAACGAAGACGCCUCAUUCAGUUCUUGAAUGGCGCGUCACGCUGUG----ACCGG------------- ((((((.....))-------))))........((..((((((....)))..........(((((.((((((((...)))))))).))))).)))..))----.....------------- ( -37.00) >consensus GUGGGAAGAAAUG________CCCGACUAUAACGCGGGGACCGGCCGACUGUGAACGCAGACGCCUCAUUCAGUCACUGAAUGGCGCGUCACGUCGUG____ACCGU_____________ ................................(((.(((..........(((....)))((((((((((((((...)))))))))))))).))).)))...................... (-18.22 = -18.20 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:30 2007