| Sequence ID | pao.1775 |
|---|---|
| Location | 3,312,470 – 3,312,527 |
| Length | 57 |
| Max. P | 0.790240 |
| Location | 3,312,470 – 3,312,527 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 76.03 |
| Mean single sequence MFE | -18.32 |
| Consensus MFE | -10.69 |
| Energy contribution | -10.22 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.790240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1775 3312470 57 - 6264404 UCACCGGCCAGGC---C-UGUCUGGCGACAUCCUUAUUCACCGGAGAAUAACGAGGAAUCC ...((.((((((.---.-..))))))....((.((((((......)))))).))))..... ( -16.80) >pel.2095 3942417 53 - 5888780 U---UCGCCGGGC--AGCCCCCAGGCGAUCUUCUU-UUCACCGGAGAGUAACGAGGAAU-- .---((((((((.--....))).)))))(((((((-(((....)))))....)))))..-- ( -16.80) >pss.1211 3776479 51 + 6093698 UCGAUCGCCUGGU--GC-CGCCGGGCGAC-UUCUU-UUCACCGGAGAGU---GAGGAAU-- ....((((((((.--..-..))))))))(-(((((-(((....))))).---))))...-- ( -20.90) >psp.1182 3615784 51 + 5928787 UCGAUCGCCUGGU--GU-CGCCAGGCGAC-UUCUU-UUCACCGGAGAGU---GAGGAAU-- ....((((((((.--..-..))))))))(-(((((-(((....))))).---))))...-- ( -21.60) >pf5.1086 5053608 57 + 7074893 UCAACCGCCAGGUUCUC-GCCUAGGCGACUUUCUU-UUCACCGGAGAGUAACGAGGAAU-- ....(((((((((....-)))).))).(((((((.-......))))))).....))...-- ( -17.10) >pfo.2420 4658542 55 - 6438405 UCAACCGCCAGGU--UC-GCCUAGGCGACUUUCUU-UUCACCGGAGAGUAACGAGGAAU-- ....((((((((.--..-.))).))).(((((((.-......))))))).....))...-- ( -16.70) >consensus UCAACCGCCAGGU__GC_CCCCAGGCGAC_UUCUU_UUCACCGGAGAGUAACGAGGAAU__ .....((((.((........)).))))...(((((.(((......)))....))))).... (-10.69 = -10.22 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:05 2007