Locus 129

Sequence ID pao.1780
Location 3,318,755 – 3,318,872
Length 117
Max. P 0.509239
window598

overview

Window 8

Location 3,318,755 – 3,318,872
Length 117
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 82.55
Mean single sequence MFE -33.48
Consensus MFE -24.55
Energy contribution -23.17
Covariance contribution -1.39
Combinations/Pair 1.33
Mean z-score -1.35
Structure conservation index 0.73
SVM decision value -0.05
SVM RNA-class probability 0.509239
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1780 3318755 117 + 6264404
CGCGGUAUCUCCCCCCAAGUACCCAGCCAGUGAAGGUACCGAGGAAU--GCGUACCUUUGUUCCACUCCUAAUGGUCUUGACCCGGAUUCAUCCCCCAGAACCCGGGUUUUUUUUAUCC
...((((........((((.(((.....(((((((((((((.....)--).))))))).....))))......)))))))((((((.(((........))).))))))......)))). ( -29.40)
>pel.897 4195048 117 - 5888780
CGGCGCAU-CCCCCCCAAGUGGCGCGCUGAUAAAGGUGCCCAGGGACC-GUGUGCCUUUGUUUUACUCCUAAUGGUCUUAACCCGGAUUCCCCCCCCAGAACCCGGGUUUUUUUUGCCC
.(((((((-...(((....(((.(((((......)))))))))))...-))))))).................(((...(((((((.(((........))).)))))))......))). ( -40.10)
>ppk.1128 3952037 113 - 6181863
CGGCGCAU-CCCCCCCA-GUGGCGCGCCGAUAAAGGUGCUCAGGGACC-GCGUACCUUUGUUUUACUCCUAAUGGUCUUAACCCGGAUUCCUCCCCCAGAACCCGGGUUUUUUUUG---
((((((..-((......-..)).))))))((((((((((...(....)-..))))))))))......((....))....(((((((.(((........))).))))))).......--- ( -36.90)
>pf5.1076 5068950 115 - 7074893
GGAC--AU-CUCCCCCAAGUGAAACGCCGAUCAAGGUACCGAAGGACC-GCGUGCCUUAGUUUUACUCCUAAUGGUCUUAACCCGGAUUCACCCCCCAGAACCCGGGUUUUUUUUGCCC
(((.--..-.)))....((((((((.......(((((((((......)-).))))))).))))))))......(((...(((((((.(((........))).)))))))......))). ( -32.20)
>pfo.2441 4687441 115 + 6438405
CGAC--AU-CUCCCCCAAGUGUCGCGCCGGUAAAGGUACCAAGGGACC-GCGUGCCUUUGUUUUACUCCUAAUGGUCUUAACCCGGAUUCACCCCCCAGAACCCGGGUUUUUUUUGCCU
((((--(.-((......)))))))......(((((((((...(....)-..))))))))).............(((...(((((((.(((........))).)))))))......))). ( -31.00)
>pst.2272 4332904 116 + 6397126
CGUC--AU-AUCCCCCAAAUGACUCGCCAGUGGAGGUGCCAAUGGAUCAGCGCACCUUUGUUUUACUCCUAAUGGUCUUAACCCGGCUUCACCCCCCAGAAUCCGGGUUUUUUUUGCCU
.(((--((-.........))))).....((..((((((((.........).)))))))..))...........(((...(((((((.(((........))).)))))))......))). ( -31.30)
>consensus
CGAC__AU_CCCCCCCAAGUGACGCGCCGAUAAAGGUACCAAGGGACC_GCGUACCUUUGUUUUACUCCUAAUGGUCUUAACCCGGAUUCACCCCCCAGAACCCGGGUUUUUUUUGCCC
..............(((...........(((((((((((............)))))))))))..........)))....(((((((.(((........))).))))))).......... (-24.55 = -23.17 +  -1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:04 2007