| Sequence ID | pao.1786 |
|---|---|
| Location | 3,332,715 – 3,332,828 |
| Length | 113 |
| Max. P | 0.991265 |
| Location | 3,332,715 – 3,332,808 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 74.31 |
| Mean single sequence MFE | -37.45 |
| Consensus MFE | -23.47 |
| Energy contribution | -23.42 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.63 |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.991265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1786 3332715 93 + 6264404 --UGAAACACAGGAAGCAGGAGACGU-AGUCGCGG---ACCGG-CACCCA-----GUGCC-GAGCGCCGCUGGACACGGGAAUGGCCCGCCAUUCCUGAAUACGCG --.............((.(....)((-((((((((---..(((-(((...-----)))))-)....))))..))).(((((((((....)))))))))..))))). ( -39.50) >pst.2278 4347099 97 + 6397126 AUGCCACCACAGCAAGCAGGAAACGU-CGUCGCGACCCUCCGCCCCCUCU-----GGGCGAGGACCUCGCUAGACACUGGAGUGGCCAACCACUCCUGA---CGCG .(((.......))).((.(....)((-((((((((.((((.((((.....-----))))))))...))))..)))...(((((((....))))))).))---))). ( -41.60) >pss.973 4247929 97 - 6093698 AUGCCACCACAGCAAGCAGGAAACGU-CGUCGCGACCCUCCGCCCCCUCU-----GGGCGAGGACCUCGCUAGACACUGGAGUGUCCAACCACUCCUGA---CGUG .(((.......)))........((((-((((((((.((((.((((.....-----))))))))...))))..)))...((((((......)))))).))---))). ( -37.10) >pf5.1069 5082868 98 - 7074893 A-GUCACCACAGCAAGCAGGACGCGUAAGUCGCGAC--UUCGUUCUUAGUUACCCGGACG--AACCUCGCUAGACACUCGAGUGGUCAACCACUCCUGA---CGCA .-((((........((((((.((((.....))))..--(((((((..........)))))--))))).)))........((((((....)))))).)))---)... ( -31.70) >pfo.2449 4701630 93 + 6438405 A-GUAGCCACAGCAAGCAGGACGCGUACGUCGCGAU--AACGGCCCAAUU-----GGCCG--GACAUCGCUGGACACGGGAAUGGCCAACCACUCCCGA---CGCA .-...((....)).........((((..((((((((--..(((((.....-----)))))--...)))))..))).(((((.(((....))).))))))---))). ( -37.70) >psp.977 4031629 97 - 5928787 AUGCCACCACAGCAAGCAGGAAACGU-CGUCGCGACCCUACGCCCCCUCU-----GGGCGAGGACCUCGCUAGACACUGGAGUGUCCAACCACUCCUGA---CGUG .(((.......)))........((((-((((((((.(((.(((((.....-----))))))))...))))..)))...((((((......)))))).))---))). ( -37.10) >consensus A_GCCACCACAGCAAGCAGGAAACGU_CGUCGCGAC__UCCGCCCCCUCU_____GGGCG_GGACCUCGCUAGACACUGGAGUGGCCAACCACUCCUGA___CGCG ...............((...........(((((((.....(((((..........)))))......))))..))).(.(((((((....))))))).).....)). (-23.47 = -23.42 + -0.05)
| Location | 3,332,732 – 3,332,828 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 76.59 |
| Mean single sequence MFE | -37.45 |
| Consensus MFE | -23.37 |
| Energy contribution | -23.65 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.836158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1786 3332732 96 + 6264404 GAGACGU-AGUCGCGG---ACCGG-CACCCA-----GUGCC-GAGCGCCGCUGGACACGGGAAUGGCCCGCCAUUCCUGAAUACGCGCCCGAGCACCGACCGUGAGA ....((.-.(((((((---..(((-(((...-----)))))-)....)))).((...(((((((((....))))))))).....((......)).)))))..))... ( -41.10) >pst.2278 4347118 98 + 6397126 GAAACGU-CGUCGCGACCCUCCGCCCCCUCU-----GGGCGAGGACCUCGCUAGACACUGGAGUGGCCAACCACUCCUGA---CGCGCCCUGACACCGACCGUGAGA ....(((-((((((((.((((.((((.....-----))))))))...))))..)))...(((((((....))))))).))---))....((.((.......)).)). ( -39.00) >pss.973 4247948 98 - 6093698 GAAACGU-CGUCGCGACCCUCCGCCCCCUCU-----GGGCGAGGACCUCGCUAGACACUGGAGUGUCCAACCACUCCUGA---CGUGCCCUGACACCGACCGUGAGA ...((((-((((((((.((((.((((.....-----))))))))...))))..)))...((((((......)))))).))---)))...((.((.......)).)). ( -37.60) >pf5.1069 5082886 99 - 7074893 GACGCGUAAGUCGCGAC--UUCGUUCUUAGUUACCCGGACG--AACCUCGCUAGACACUCGAGUGGUCAACCACUCCUGA---CGCACC-UGACACCGACCGUGAGA ...((((..(((((((.--(((((((..........)))))--))..))))..)))....((((((....))))))...)---)))..(-(.((.......)).)). ( -30.70) >pfo.2449 4701648 94 + 6438405 GACGCGUACGUCGCGAU--AACGGCCCAAUU-----GGCCG--GACAUCGCUGGACACGGGAAUGGCCAACCACUCCCGA---CGCACC-UGACACCGACCGUGAGA ...((((..((((((((--..(((((.....-----)))))--...)))))..))).(((((.(((....))).))))))---)))..(-(.((.......)).)). ( -38.70) >psp.977 4031648 98 - 5928787 GAAACGU-CGUCGCGACCCUACGCCCCCUCU-----GGGCGAGGACCUCGCUAGACACUGGAGUGUCCAACCACUCCUGA---CGUGCCCUGACACCGACCGUGAGA ...((((-((((((((.(((.(((((.....-----))))))))...))))..)))...((((((......)))))).))---)))...((.((.......)).)). ( -37.60) >consensus GAAACGU_CGUCGCGAC__UCCGCCCCCUCU_____GGGCG_GGACCUCGCUAGACACUGGAGUGGCCAACCACUCCUGA___CGCGCCCUGACACCGACCGUGAGA ...(((...(((((((.....(((((..........)))))......))))..))).(.(((((((....))))))).)....))).......(((.....)))... (-23.37 = -23.65 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:03 2007