| Sequence ID | pao.1624 |
|---|---|
| Location | 3,099,292 – 3,099,351 |
| Length | 59 |
| Max. P | 0.841928 |
| Location | 3,099,292 – 3,099,351 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 86.85 |
| Mean single sequence MFE | -16.58 |
| Consensus MFE | -16.00 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1624 3099292 59 - 6264404 AUGGGGUGCAAGGGGUCGAGUGUUCGAAUCACUCCGUCCCGACCAAAA-AACCUAA-AAAA .((((.((...((((..(((((.......)))))..))))...))...-..)))).-.... ( -17.40) >pau.1380 4062969 60 + 6537648 AUGGGGUGCAAGGGGUCGAGUGUUCGAAUCACUCCGUCCCGACCAAAAUAUCCUAG-AAAA .(((((((...((((..(((((.......)))))..))))........))))))).-.... ( -17.90) >ppk.1460 3332973 58 + 6181863 AUGGGGUGCAAGGGGUCGAGUGUUCGAAUCACUCCGUCCCGACCAUAU-AUUUCAAUGA-- .((..(((...((((..(((((.......)))))..)))).......)-))..))....-- ( -16.20) >pf5.1273 4736508 58 + 7074893 AUGGGGUGCUAGGGGUCGAGUGUUCGAAUCACUCCGUCCCGACCAUAU-UUUUCAAUGA-- ....(((....((((..(((((.......)))))..)))).)))....-..........-- ( -16.00) >pst.1446 3762301 58 + 6397126 AUGGGGUGCUAGGGGUCGAGUGUUCGAAUCACUCCGUCCCGACCAUAU-UAUUCAAUGA-- ....(((....((((..(((((.......)))))..)))).)))....-..........-- ( -16.00) >pfo.1118 4230479 55 + 6438405 AUGGGGUGCUAGGGGUCGAGUGUUCGAAUCACUCCGUCCCGACCAUAU-AAUUCAA----- ....(((....((((..(((((.......)))))..)))).)))....-.......----- ( -16.00) >consensus AUGGGGUGCAAGGGGUCGAGUGUUCGAAUCACUCCGUCCCGACCAUAU_AAUUCAA_GA__ ....(((....((((..(((((.......)))))..)))).)))................. (-16.00 = -16.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:01 2007