Locus 126

Sequence ID pao.1799
Location 3,367,671 – 3,367,780
Length 109
Max. P 0.976453
window593 window594

overview

Window 3

Location 3,367,671 – 3,367,780
Length 109
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 69.71
Mean single sequence MFE -29.53
Consensus MFE -13.18
Energy contribution -14.85
Covariance contribution 1.67
Combinations/Pair 1.25
Mean z-score -1.63
Structure conservation index 0.45
SVM decision value 0.09
SVM RNA-class probability 0.580332
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1799 3367671 109 + 6264404
GGUUUCUCCGCCUGACAAACACUUGUUUGAAACAUACGUUUCAGCCACAUCCCUUGUCAAGCGGCA----------GAUGACGCACCAGUCAGGAAAAUUACAGAGAAGUCCCGAAAAA
(((((((((((.((((((.....((((((((((....)))))))..)))....)))))).)))...----------..((((......))))...........)))))).))....... ( -29.60)
>psp.1872 3714037 108 + 5928787
----UCUCUGCCUAACAAACGAACGUUUGAAACAUACGUAUCAGGCGCCCAGUUUGUCAAGCGGCCCCGUUCAUUUUGUGGCUGAACAGUCACGAAACU-------GGAUGUUAAAUGA
----...((((...((((((...(((((((.((....)).)))))))....))))))...))))...((((((((((((((((....)))))))))).)-------)))))........ ( -34.70)
>psp.1872 3714037 108 + 5928787
----UCUCUGCCUAACAAACGAACGUUUGAAACAUACGUAUCAGGCGCCCAGUUUGUCAAGCGGCCCCGUUCAUUUUGUGGCUGAACAGUCACGAAACU-------GGAUGUUAAAUGA
----...((((...((((((...(((((((.((....)).)))))))....))))))...))))...((((((((((((((((....)))))))))).)-------)))))........ ( -34.70)
>pst.2075 3961139 107 + 6397126
----UCUCUGCCUAACAAACGAACGUUUGAAACAUACGUAUCAGGCGCACUGCUUGUCAAGCGAGG-CGUUCACUUUGUGGCCGGACAGUCACGAAACC-------CGCUUUCAGAUGA
----..((((..........((((((((((.((....)).))))))((..((((.....))))..)-)))))..((((((((......))))))))...-------......))))... ( -28.10)
>pss.1960 3930231 108 + 6093698
----UCUCUGCCUAACAAACGAACGUUUGAAACAUACGUAUCAAACGCCUCGAUUGUCAAGCCGGACCGUUCAUUUUGUGGCCGAACAGUCACGGUAAA-------GGAUGUUAAAUGA
----......(((.((((.(((.(((((((.((....)).)))))))..))).))))...(((((((.((((...........)))).))).))))..)-------))........... ( -29.00)
>pfo.2273 4378263 98 + 6438405
-----CUCCGCCUGACAAACACUUGUUUGAAACAUACGUUUCAGCC-UAUGCCUUGUCAAGCCUGCCAGUUCGUUUUGGGAAUGGUCGGUCA---------------GAUAUUUAACCA
-----.......((((((.((...(.(((((((....))))))).)-..))..)))))).(((.((((.(((......))).)))).)))..---------------............ ( -21.10)
>consensus
____UCUCUGCCUAACAAACGAACGUUUGAAACAUACGUAUCAGGCGCACAGCUUGUCAAGCGGCCCCGUUCAUUUUGUGGCUGAACAGUCACGAAACU_______GGAUGUUAAAUGA
.......((((...((((.....(((((((.((....)).)))))))......))))...))))...........(((((((......)))))))........................ (-13.18 = -14.85 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 3,367,671 – 3,367,780
Length 109
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 69.71
Mean single sequence MFE -33.56
Consensus MFE -19.61
Energy contribution -19.67
Covariance contribution 0.06
Combinations/Pair 1.24
Mean z-score -1.95
Structure conservation index 0.58
SVM decision value 1.77
SVM RNA-class probability 0.976453
Prediction RNA

Download alignment: ClustalW | MAF

>pao.1799 3367671 109 - 6264404
UUUUUCGGGACUUCUCUGUAAUUUUCCUGACUGGUGCGUCAUC----------UGCCGCUUGACAAGGGAUGUGGCUGAAACGUAUGUUUCAAACAAGUGUUUGUCAGGCGGAGAAACC
....((((((..............))))))...........((----------(.((((((((((((.(...((..((((((....))))))..))..).))))))))))))))).... ( -35.94)
>psp.1872 3714037 108 - 5928787
UCAUUUAACAUCC-------AGUUUCGUGACUGUUCAGCCACAAAAUGAACGGGGCCGCUUGACAAACUGGGCGCCUGAUACGUAUGUUUCAAACGUUCGUUUGUUAGGCAGAGA----
((((..(((....-------.)))..))))(((((((.........)))))))....(((((((((((.(((((..(((.((....)).)))..)))))))))))))))).....---- ( -33.80)
>psp.1872 3714037 108 - 5928787
UCAUUUAACAUCC-------AGUUUCGUGACUGUUCAGCCACAAAAUGAACGGGGCCGCUUGACAAACUGGGCGCCUGAUACGUAUGUUUCAAACGUUCGUUUGUUAGGCAGAGA----
((((..(((....-------.)))..))))(((((((.........)))))))....(((((((((((.(((((..(((.((....)).)))..)))))))))))))))).....---- ( -33.80)
>pst.2075 3961139 107 - 6397126
UCAUCUGAAAGCG-------GGUUUCGUGACUGUCCGGCCACAAAGUGAACG-CCUCGCUUGACAAGCAGUGCGCCUGAUACGUAUGUUUCAAACGUUCGUUUGUUAGGCAGAGA----
..........(((-------..(...(((.((....)).))).....)..))-)((((((((((((((...(((..(((.((....)).)))..)))..))))))))))).))).---- ( -29.00)
>pss.1960 3930231 108 - 6093698
UCAUUUAACAUCC-------UUUACCGUGACUGUUCGGCCACAAAAUGAACGGUCCGGCUUGACAAUCGAGGCGUUUGAUACGUAUGUUUCAAACGUUCGUUUGUUAGGCAGAGA----
............(-------(((..((.(((((((((.........)))))))))))(((((((((.((((.(((((((.((....)).))))))))))).))))))))))))).---- ( -39.80)
>pfo.2273 4378263 98 - 6438405
UGGUUAAAUAUC---------------UGACCGACCAUUCCCAAAACGAACUGGCAGGCUUGACAAGGCAUA-GGCUGAAACGUAUGUUUCAAACAAGUGUUUGUCAGGCGGAG-----
.(((((......---------------)))))..((....(((........)))...((((((((((.(((.-(..((((((....))))))..)..)))))))))))))))..----- ( -29.00)
>consensus
UCAUUUAACAUCC_______AGUUUCGUGACUGUUCAGCCACAAAAUGAACGGGCCCGCUUGACAAGCGAGGCGCCUGAUACGUAUGUUUCAAACGUUCGUUUGUUAGGCAGAGA____
.........................................................(((((((((((.(((((..(((.((....)).)))..))))))))))))))))......... (-19.61 = -19.67 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:14:00 2007