Locus 122

Sequence ID pao.3167
Location 5,992,273 – 5,992,382
Length 109
Max. P 0.517110
window583

overview

Window 3

Location 5,992,273 – 5,992,382
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.95
Mean single sequence MFE -34.05
Consensus MFE -23.94
Energy contribution -24.48
Covariance contribution 0.55
Combinations/Pair 1.20
Mean z-score -1.84
Structure conservation index 0.70
SVM decision value -0.03
SVM RNA-class probability 0.517110
Prediction RNA

Download alignment: ClustalW | MAF

>pao.3167 5992273 109 + 6264404
UCGCGAGGAGCCG-----------GCAUUGGCAGAUCCGUUGUUCCAGAACACCGACAUUCUGGAUAUCGACAUUCUCGAUGAAGACCAGGACCUCCUGGGAUUGGAGCAAACCCCCAUC
(((((((((((((-----------....))))......((((.(((((((........)))))))...)))).)))))).)))...(((((....)))))(((.((........)).))) ( -36.20)
>pss.139 5860172 117 - 6093698
UCCACCGUGGCUGCAUCACGCACCGACUGGACCGAUCCGCUGUUUCAAGAUACCGAUAUCCUUGAUAUCGACCUUCUCGACGAAAACCAGGACUUCCUGAGAUCGGAGCAUAACCUC---
((((...(((.(((.....))))))..))))((((((.......((.(((...(((((((...)))))))....))).)).......((((....)))).))))))...........--- ( -33.00)
>pst.49 6291874 117 - 6397126
CCUGCAGUCGUUGCGUCGCGUACCGACUGGACCGAUCCGCUGUUUCAAGAUACCGAUAUUCUUGAUAUCGACCCUCUCGACGAAAACCAGGACUUCCUGAGAUCGGAGCAUCCCCUC---
....((((((.((((...)))).))))))..((((((((.....((((((.........))))))..((((.....)))))).....((((....)))).))))))...........--- ( -33.90)
>psp.123 5683959 117 - 5928787
UCCACAGUGGCUGCAUCACGCACCGACUGGACCGAUCCACUGUUUCAAGAUACCGAUAUCCUUGAUAUCGACCUUCUCGAUGAAAACCAGGACUUCCUGAGAUCGGAGCAUCCCCUC---
((((...(((.(((.....))))))..))))((((((.....((((((((...(((((((...)))))))....)))...)))))..((((....)))).))))))...........--- ( -34.10)
>psp.123 5683959 117 - 5928787
UCCACAGUGGCUGCAUCACGCACCGACUGGACCGAUCCACUGUUUCAAGAUACCGAUAUCCUUGAUAUCGACCUUCUCGAUGAAAACCAGGACUUCCUGAGAUCGGAGCAUCCCCUC---
((((...(((.(((.....))))))..))))((((((.....((((((((...(((((((...)))))))....)))...)))))..((((....)))).))))))...........--- ( -34.10)
>pss.139 5860172 117 - 6093698
UCCACCGUGGCUGCAUCACGCACCGACUGGACCGAUCCGCUGUUUCAAGAUACCGAUAUCCUUGAUAUCGACCUUCUCGACGAAAACCAGGACUUCCUGAGAUCGGAGCAUAACCUC---
((((...(((.(((.....))))))..))))((((((.......((.(((...(((((((...)))))))....))).)).......((((....)))).))))))...........--- ( -33.00)
>consensus
UCCACAGUGGCUGCAUCACGCACCGACUGGACCGAUCCGCUGUUUCAAGAUACCGAUAUCCUUGAUAUCGACCUUCUCGACGAAAACCAGGACUUCCUGAGAUCGGAGCAUACCCUC___
....((((.(.(((.....))).).))))..((((((.......((.(((...(((((((...)))))))....))).)).......((((....)))).)))))).............. (-23.94 = -24.48 +   0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:13:48 2007