| Sequence ID | pao.1848 |
|---|---|
| Location | 3,475,522 – 3,475,737 |
| Length | 215 |
| Max. P | 0.993702 |
| Location | 3,475,522 – 3,475,611 |
|---|---|
| Length | 89 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 59.41 |
| Mean single sequence MFE | -32.58 |
| Consensus MFE | -8.48 |
| Energy contribution | -8.78 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.26 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>pao.1848 3475522 89 - 6264404 C--GUCUUCCACCAGA-AGGCG-GGCAGCCUGGCUGCAACGAGAGG-----AAGUCGCUUCACCGGGC----------AUCUUG-CCCAGCCGACGCGCAGCGGUAGUU (--((((((.....))-)))))-(((.(((..(((((..(....).-----..((((((.....((((----------.....)-))))).))))..)))))))).))) ( -34.40) >pss.987 4217179 105 + 6093698 CGGGUCUGCGAUUGAA-AAGCCCAAGGGUC---UUUCAGUCACGUGUACAGGAAGCAGCCUACCCAAGGUUUGUUUCAAACAGGUUUACAGCGAUACGCAGCGGUAGUU .....(((((((((((-(..((....))..---))))))))((.(((....((((((((((.....))).)))))))..))).)).....(((...))).))))..... ( -33.90) >pf5.1251 4766976 93 + 7074893 CUGGCUUGAGAUUGAGGAAGCCUCGAAGCU---CUUCAAUCAGAUGAUU--UAAACGGUUCACAUGGA----------CGCAAG-UCCAAGCGAUACGCAGCGGUAGUU ...(((...(((((((((.((......)))---))))))))........--....((..((.(.((((----------(....)-)))).).))..)).)))....... ( -29.50) >pfo.1098 4261687 83 + 6438405 CUGGUUCGCGAUUGAA-AAGCACCGAAGCU----UUCAGUCA-----------AACGAGUUACUUGAG----------CGCAAGCUCAAAGCGAUACGCAGCGGUAGUU ((((((((((((((((-(.((......)))----))))))).-----------..........(((((----------(....)))))).)))).)).)))........ ( -30.30) >psp.993 4000822 105 + 5928787 CGGGUCUGCGAUUGAA-AAGCCCAAGGGUC---UUUCAGUCACCAGUACAGGAAGCAAACUACCGAAGGUUUGUUUCAAACAGGUUUACAGCGAUACGCAGCGGUAGUU .....(((((((((((-(..((....))..---))))))))(((.((....((((((((((......))))))))))..)).))).....(((...))).))))..... ( -34.60) >pst.2263 4316363 104 - 6397126 CGGAUCUGCGAUUGAA-AAGCCCAAGGCUC---UUUCAAUCACAAGUACA-GAAGCAAGCUACAAAAGGUUUGUUUCAAACAGGUUUACAGCGAUACGCAGCGGUAGUU ..((((((.(((((((-(((((...)))).---)))))))).........-((((((((((......))))))))))...))))))(((.((........)).)))... ( -32.80) >consensus CGGGUCUGCGAUUGAA_AAGCCCAAGAGCC___UUUCAAUCACAAGUAC__GAAGCAAGCUACCGAAG__________AACAGGUUCAAAGCGAUACGCAGCGGUAGUU .....(((((((((((...((......)).....))))))).................................................(((...))).))))..... ( -8.48 = -8.78 + 0.31)
| Location | 3,475,552 – 3,475,644 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 52.81 |
| Mean single sequence MFE | -30.05 |
| Consensus MFE | -12.54 |
| Energy contribution | -12.30 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.67 |
| Mean z-score | -2.86 |
| Structure conservation index | 0.42 |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.993702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1848 3475552 92 - 6264404 CUUCCCCUCCCGAGUUC-ACCACCCCGAACUC-GCC--GUCUUCCACCAGA-AGGCG-GGCAGCCUGGCUGCAACGAGAGG-----AAGUCGCUUCACCGGGC- (((((.(((.(((((((-........))))))-)((--((((((.....))-)))))-)(((((...)))))...))).))-----)))..(((......)))- ( -38.60) >pss.987 4217219 85 + 6093698 --------------UUUGUACAGAUCGGGUUC-GCCGGGUCUGCGAUUGAA-AAGCCCAAGGGUC---UUUCAGUCACGUGUACAGGAAGCAGCCUACCCAAGG --------------((((((((((((.((...-.)).)))))(.(((((((-(..((....))..---)))))))).)..)))))))......(((.....))) ( -30.60) >pf5.1251 4767006 82 + 7074893 --------------UUU-UCCAAGUCAGGUUC-GCCUGGCUUGAGAUUGAGGAAGCCUCGAAGCU---CUUCAAUCAGAUGAUU--UAAACGGUUCACAUGGA- --------------...-..(((((((((...-.))))))))).(((((((((.((......)))---))))))))........--.................- ( -27.80) >pfo.1098 4261718 72 + 6438405 --------------UUU-AACGAGCCAGGCACUGUCUGGUUCGCGAUUGAA-AAGCACCGAAGCU----UUCAGUCA-----------AACGAGUUACUUGAG- --------------...-..((((((((((...)))))))))).(((((((-(.((......)))----))))))).-----------..((((...))))..- ( -25.80) >psp.993 4000862 85 + 5928787 --------------UUUGUAAAGAUCGGGUUC-GCCGGGUCUGCGAUUGAA-AAGCCCAAGGGUC---UUUCAGUCACCAGUACAGGAAGCAAACUACCGAAGG --------------..((((.(((((.((...-.)).)))))..(((((((-(..((....))..---)))))))).....))))((.((....)).))..... ( -27.40) >pst.2263 4316403 84 - 6397126 --------------UUUGUACAGAUCGGGUUA-GCCGGAUCUGCGAUUGAA-AAGCCCAAGGCUC---UUUCAAUCACAAGUACA-GAAGCAAGCUACAAAAGG --------------((((((((((((.((...-.)).)))))(.(((((((-(((((...)))).---)))))))).)..)))))-))................ ( -30.10) >consensus ______________UUU_UACAGAUCGGGUUC_GCCGGGUCUGCGAUUGAA_AAGCCCAAGAGCC___UUUCAAUCACAAGUAC__GAAGCAAGCUACCGAAG_ ....................((((((.(((...))).)))))).(((((((...((......)).....)))))))............................ (-12.54 = -12.30 + -0.24)
| Location | 3,475,622 – 3,475,737 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 81.41 |
| Mean single sequence MFE | -41.58 |
| Consensus MFE | -40.23 |
| Energy contribution | -39.95 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1848 3475622 115 + 6264404 GUGG----UGAACUCGGGAGGGGAAGUGAAUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGCGUAACUUGCG ...(----..(.(((....)))..........(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..))))))))).....)..). ( -44.60) >pau.1148 4444981 115 - 6537648 GUGG----UGAACUCGGGAGGGGAAGUGAAUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGCGUAACUUGCG ...(----..(.(((....)))..........(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..))))))))).....)..). ( -44.60) >pel.947 4121035 91 - 5888780 CUGG----AGAA----------------AAUGGCGCGGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCCGCGCAU-------- ....----....----------------....(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..)))))))))..-------- ( -41.20) >ppk.1152 3910236 95 - 6181863 CUGUUACUGAAA----------------AAUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGCAG-------- ............----------------....(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..)))))))))..-------- ( -39.70) >pf5.1251 4767080 95 - 7074893 UUGG----AAAA----------------UAUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGCGUCGGU---- ....----....----------------....(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..)))))))))......---- ( -39.70) >pfo.1098 4261782 94 - 6438405 UCGU----UAAA----------------UAUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGCGUCGG----- ....----....----------------....(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..))))))))).....----- ( -39.70) >consensus CUGG____UAAA________________AAUGGCGCAGCGGACGGGACUCGAACCCGCGACCCCCGGCGUGACAGGCCGGUAUUCUAACCGACUGAACUACCGCUGCGCGU________ ................................(((((((((.((((..(((......)))..))))..((..(((..((((......)))).))).))..))))))))).......... (-40.23 = -39.95 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:13:40 2007