| Sequence ID | pao.1948 |
|---|---|
| Location | 3,650,506 – 3,650,583 |
| Length | 77 |
| Max. P | 0.509509 |
| Location | 3,650,506 – 3,650,583 |
|---|---|
| Length | 77 |
| Sequences | 6 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 78.69 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -14.23 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.56 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1948 3650506 77 + 6264404 UGAAGCCGCGAGCUUAGCAGGCUGUCGCGACCAGUGGCUAUGGGCAAUAGGAACAGGUGCGCGCGGAUAAGUUCAAG .........(((((((.....(((.(((((((.((..((((.....))))..)).))).))))))).)))))))... ( -25.40) >pel.772 4394045 76 - 5888780 UAAAGCCGCGAGCUUAUCAGGCGGCCACGACCAAUGGCUACCGGCA-UGAGAGCGGCAAAUGCCGGAGAAGUUCCAG ....(((((...((((((.((..((((.......))))..)).).)-)))).))))).......((((...)))).. ( -27.60) >ppk.964 4267085 76 - 6181863 UAAAGCCGCGAGCUUAUCAGGCGGCCAUGACCAAUGGCUACCGGCA-UAGGAGCGGGUUUUCGUAAGGAAGUUCAGU .....((((...((((((.((..(((((.....)))))..)).).)-)))).)))).(((((....)))))...... ( -27.20) >pf5.2682 5109286 76 + 7074893 UAAAGCCGCGAGCUUAUCAGGCGACCACGACCAAUGGCUACCGGCG-UAAGAGUAGUAAAUGGCCGAUAAGUUCACG ......((.(((((((((.((((....)).))...(((((...((.-........))...)))))))))))))).)) ( -24.00) >pfo.942 4573906 76 - 6438405 UAAAGCCGCGAGCUUAUCAGGCCGCCACGACCAAUGGCUACCGGCA-UGAGAGCAGGAAUCUUCCGAUAAGUUCAGG .....((..(((((((((.((..((((.......))))..)).((.-.....)).(((....)))))))))))).)) ( -23.70) >psp.950 4092614 76 - 5928787 UAAAGCCGCGAGCUUAUCAGGCAGCCGCGAUCAAUGGCUACCGGCA-UGAGAGGGAGAAAACGCCGAUAAGUUCAGG .....((..(((((((((.((.(((((.......))))).))(((.-...............)))))))))))).)) ( -25.29) >consensus UAAAGCCGCGAGCUUAUCAGGCGGCCACGACCAAUGGCUACCGGCA_UAAGAGCAGGAAAUCGCCGAUAAGUUCAGG .........(((((((((.((.(((((.......))))).)).((.......))...........)))))))))... (-14.23 = -15.10 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:13:09 2007