| Sequence ID | pao.1976 |
|---|---|
| Location | 3,705,307 – 3,705,369 |
| Length | 62 |
| Max. P | 0.998967 |
| Location | 3,705,307 – 3,705,369 |
|---|---|
| Length | 62 |
| Sequences | 4 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 84.99 |
| Mean single sequence MFE | -17.77 |
| Consensus MFE | -13.96 |
| Energy contribution | -14.03 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540740 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1976 3705307 62 + 6264404 CAAAAAAAA-CGGGCGACCGAAGUCGCCCUAAGUGCCUUGCGUGCUCUGUGUAUCCGGGAGGA .........-.(((((((....)))))))......((((.(((((.....)))..)).)))). ( -21.90) >pau.1004 4695734 55 - 6537648 C-AAAAAAA-CGGGCGACCGAAGUCGCCCUAAGUGCCUUGCGUGCUCUGUGUAUCCG------ .-.......-.(((((((....)))))))..((..(.....)..))...........------ ( -16.10) >pel.707 4527976 54 - 5888780 C-AAAAAAA-UGGGCGACCGAAGUCGCCCUAAAUGCCUUGCGUGCUCGU-GAAUCGG------ .-.......-.(((((((....)))))))........(..((....)).-.).....------ ( -16.20) >ppk.653 4865428 55 - 6181863 C-AAAAAAAAUGGGCGACCGAAGUCGCCCUAAAUGCCUUGCGUGCUCGU-GUACCCG------ .-.........(((((((....)))))))..........(.((((....-)))).).------ ( -16.90) >consensus C_AAAAAAA_CGGGCGACCGAAGUCGCCCUAAAUGCCUUGCGUGCUCGG_GUAUCCG______ ...........(((((((....)))))))............((((.....))))......... (-13.96 = -14.03 + 0.06)
| Location | 3,705,307 – 3,705,369 |
|---|---|
| Length | 62 |
| Sequences | 4 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 84.99 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -22.50 |
| Energy contribution | -22.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.17 |
| Structure conservation index | 0.97 |
| SVM decision value | 3.30 |
| SVM RNA-class probability | 0.998967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1976 3705307 62 - 6264404 UCCUCCCGGAUACACAGAGCACGCAAGGCACUUAGGGCGACUUCGGUCGCCCG-UUUUUUUUG (((....)))....((((((.(....))).....(((((((....))))))).-.....)))) ( -24.50) >pau.1004 4695734 55 + 6537648 ------CGGAUACACAGAGCACGCAAGGCACUUAGGGCGACUUCGGUCGCCCG-UUUUUUU-G ------........((((((.(....))).....(((((((....))))))).-....)))-) ( -22.90) >pel.707 4527976 54 + 5888780 ------CCGAUUC-ACGAGCACGCAAGGCAUUUAGGGCGACUUCGGUCGCCCA-UUUUUUU-G ------.......-....((.(....))).....(((((((....))))))).-.......-. ( -22.50) >ppk.653 4865428 55 + 6181863 ------CGGGUAC-ACGAGCACGCAAGGCAUUUAGGGCGACUUCGGUCGCCCAUUUUUUUU-G ------((.....-.)).((.(....))).....(((((((....))))))).........-. ( -23.00) >consensus ______CGGAUAC_AAGAGCACGCAAGGCACUUAGGGCGACUUCGGUCGCCCA_UUUUUUU_G ..................((.(....))).....(((((((....)))))))........... (-22.50 = -22.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:13:08 2007