| Sequence ID | pao.2015 |
|---|---|
| Location | 3,779,369 – 3,779,473 |
| Length | 104 |
| Max. P | 0.896581 |
| Location | 3,779,369 – 3,779,473 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 60.69 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -7.77 |
| Energy contribution | -8.13 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.896581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2015 3779369 104 + 6264404 CAUCAUCAUGCAUUUUGCAACCGG-UAAAAUGCCCAACCGUGCAAAGUGCAUGUGAGAGAGUCUCAGGCACAUAUAUAAUUC----------AUUGAUUUAAAAGGAUUUUUUAU ..(((.(((((((((((((..(((-(..........))))))))))))))))))))((((((((..................----------............))))))))... ( -26.41) >pau.963 4777754 102 - 6537648 --UCAUCAUGCAUUUUGCAACCGG-CAAAAUGCCCAUCCGUGCAAAGUGCAUGUGAGAGAGUCUCGGACACAUAUAUAAUUC----------AUUGAUUUAAAAGGAUUUUUUAU --(((.(((((((((((((...((-(.....)))......))))))))))))))))((((((((..................----------............))))))))... ( -26.91) >psp.2043 4042217 99 + 5928787 ----AUCAUGCAAUUUGCAAUCCC-CCAAAAAGCCAUCAUUGCAAAACGCACUGCACCCGACUUUUUUUAAUUC-AUAUGUC----------AUUGAUUUAAAAGGAAUUUUUAU ----....(((..((((((((...-.............))))))))..)))...........(((((((((.((-(......----------..))).)))))))))........ ( -14.39) >pf5.2739 5209578 99 + 7074893 -----UCGUGCAAAUUGCAUCACU-GCAAAAAGCCAUCAUUGCAAAAUGCAAUUAAAGAGACUUU----------AAAAAUCAGCUCAACAUAUUGUUUUUAAAGACUUUAUCGC -----....((.((((((((...(-((((..........)))))..))))))))..((((.((((----------(((((.(((.........)))))))))))).))))...)) ( -18.80) >pfo.2511 4816270 100 + 6438405 -----CCGUGCAUUUUGCAUCCCUCCCAAAAAGCCAUCAUUGCAGAAUGCAAU-------GCUUUCUC---UUCGAAGAACCCUCUUAAAUGCUUGUUUUUAAAGGACUUAACAG -----...(((((((((((.....................)))))))))))..-------......((---((..((((((...(......)...))))))..))))........ ( -17.80) >pss.2117 4229024 100 + 6093698 ----AUCAUGCAAUUUGCAAUACC-CCAAAAAGCCAUCAUUGCAAAACGCACUGUAGAGCACUUUUUUUAAUUUAAUAAACC----------AUUGAUUUAAAAGGAUUUUUUAU ----....(((..((((((((...-.............))))))))..)))..((((((...(((((((((.(((((.....----------))))).)))))))))..)))))) ( -14.39) >consensus ____AUCAUGCAAUUUGCAACCCC_CCAAAAAGCCAUCAUUGCAAAAUGCAAUUGAGAGAACUUUUUU_A_UUA_AUAAAUC__________AUUGAUUUAAAAGGAUUUUUUAU ........((((.((((((.....................)))))).))))................................................................ ( -7.77 = -8.13 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:13:06 2007