Locus 112

Sequence ID pao.554
Location 977,743 – 977,854
Length 111
Max. P 0.701201
window541

overview

Window 1

Location 977,743 – 977,854
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.53
Mean single sequence MFE -39.50
Consensus MFE -23.21
Energy contribution -23.97
Covariance contribution 0.75
Combinations/Pair 1.23
Mean z-score -1.58
Structure conservation index 0.59
SVM decision value 0.35
SVM RNA-class probability 0.701201
Prediction RNA

Download alignment: ClustalW | MAF

>pao.554 977743 111 + 6264404
CGCGC---------GUUUACACUGCGCCUUCCCGAUGCUUUCUGUCGCAUUUCCGAAAGCCGCGGAAAUUCCCGGGUUGGCGCUAUAACAAGUUGUCGCAUGGCGGCAAUGCCGGCCCGG
.((((---------(.......)))))....(((..((((((.(........).))))))..)))......(((((((((((......)..((((((((...)))))))))))))))))) ( -44.90)
>pst.1092 2000220 107 + 6397126
----C---------GUUUAAACUGCGCCUUUGUGACGCAAUAUGUCGCAUUGCCGAAAGCCUUGAAAAAACCCGGUUUUGCGCUGUAACAAGUUGUCGCCUGGCGGCAAGGCCGAACACC
----.---------((((.......(((...((((((..((.(((..((.(((..((((((............))))))))).))..))).))))))))..)))(((...)))))))... ( -28.80)
>pfo.2526 1602765 116 - 6438405
----GCUGGCGACGGUUUAAACUGCGCCUUUGCGACGCUAUAUGUCGCAUUGCCGUAAACCCGGGAAAAUCCGGGGUUUGCGCUAUAAGAAGUUGUCGCUUGGCGGCAAGGCCGGGCACA
----...((((((..((((....((((...(((((((.....)))))))..)).((((((((.((.....)).))))))))))..))))..))))))(((((((......)))))))... ( -51.60)
>ppk.2583 1089388 106 - 6181863
----C---------CGU-ACACUGCGCGAUUGCGACAGUGUUUGUCGCAUUGCCGAAAGCCUUGUCAAAACUGGGUUUUGCGCUGUAACAAGUUGUCGCUUGGCCGCAAGGACAGGCGCG
----.---------...-(((((((((....))).))))))((((..((.(((..(((((((.((....)).)))))))))).))..))))...(.((((((.((....)).))))))). ( -40.90)
>pel.2222 1719365 107 - 5888780
----C---------CGUUACACUGCGCUAUUGCGACACUGUUUGUCGCAUUGCCGAAAACCCUGCCAAAACUGGGUUUUGCGCUGUAACAAGUUGUCGCCUGGCAGCAAGGACAGGCGCC
----.---------.((((((.(((((...(((((((.....)))))))..))..(((((((..........)))))))))).)))))).......((((((..........)))))).. ( -40.30)
>pss.2131 1845827 107 - 6093698
----C---------GUUUAAACUGCGCCUUUGUGACGCAAAUUGUCGCAUUGCCGAAAACCUUGAAAAAACCCGGUUUUGCGCUGUAACAAGUUGUCGCCUGGCGGCAAGGCCGAACACA
----.---------((((.......(((...((((((....((((..((.(((..((((((............))))))))).))..))))..))))))..)))(((...)))))))... ( -30.50)
>consensus
____C_________GUUUAAACUGCGCCUUUGCGACGCUAUUUGUCGCAUUGCCGAAAACCUUGAAAAAACCCGGUUUUGCGCUGUAACAAGUUGUCGCCUGGCGGCAAGGCCGGGCACA
.......................((((...(((((((.....)))))))......(((((((.(......).))))))))))).........(((((((...)))))))........... (-23.21 = -23.97 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:13:05 2007