| Sequence ID | pao.2107 |
|---|---|
| Location | 3,950,074 – 3,950,194 |
| Length | 120 |
| Max. P | 0.991702 |
| Location | 3,950,074 – 3,950,194 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.00 |
| Mean single sequence MFE | -23.86 |
| Consensus MFE | -18.60 |
| Energy contribution | -18.27 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.78 |
| SVM decision value | 2.08 |
| SVM RNA-class probability | 0.987389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2107 3950074 120 + 6264404 AAAAUAUUUUUUAUCCCUCUUUCAGAAGAACCGGGCCUGGCGCCCGGUUUUUUUAUGCCUUCAAUUCAAUGACUUAGCGGCAGAACGCGGAAAGAAAACAUUCGUAUUCAUAUUCUUUUU .................(((((((((((((((((((.....)))))))))))))......................(((......))).))))))......................... ( -30.20) >psp.2276 4449093 108 + 5928787 -----------UACCCCUCUUU-UAAAGAACCGGGCACCCUGCCCGGUUUUUUUAUGCCUGUAAUUCAAGCGCUUAGCGUCAAGAUGCGGAACUCAAACAUUCUUAUUCCUAUUUAAAUU -----------...........-.((((((((((((.....))))))))))))...((.((.....)).)).....((((....))))((((..............)))).......... ( -25.54) >pss.2360 4638010 106 + 6093698 -------------CCCCUCUUU-UAAAGAACCGGACACCACGUCCGGUUUUUUUAUGUCUGUAAUUCAAGCGCUUAGCGUCAAGAUGCGGAACUCAAACAUUCUUAUUCCUAUUUAAUUU -------------.........-.((((((((((((.....))))))))))))....((((((..((..((((...))))...))))))))............................. ( -24.20) >pf5.2958 5601810 100 + 7074893 --------------------UUACAAACAACCGGACCUGGCGUCCGGUUUUUUUAUGCCUGUAAUUCAAUCGCUUAGAGACAAAACGCGGAACACAAACAUUCUUAUUCCGAUUAAUUUU --------------------........((((((((.....))))))))((((((.((.((.....))...)).)))))).......(((((..............)))))......... ( -17.64) >ppk.610 4939207 100 - 6181863 -------------------AUU-UCAAGAACCGGACCUGGUGUCCGGUUUUUUUAUGCCCGCAAUUCAACAAGUUAGCGUUGCAACGCGGUUCACAAACAUUCUUAUUCCUAUUAAUUUU -------------------...-..(((((((((((.....)))))))))))......((((....((((........))))....)))).............................. ( -23.40) >pel.650 4617261 100 - 5888780 -------------------UUU-UGAAGAACCGGACCUCGCGUCCGGUUUUUUUAUGCCUGUAAUUCAAUAAGUUAGCGCCAUAACGCGGUUCACAAACAUUCUUAUUCCGAUUAAAUUU -------------------...-.((((((((((((.....))))))))))))........(((((.((((((...(((......))).(((....)))...))))))..)))))..... ( -22.20) >consensus ___________________UUU_UAAAGAACCGGACCUCGCGUCCGGUUUUUUUAUGCCUGUAAUUCAAUCACUUAGCGUCAAAACGCGGAACACAAACAUUCUUAUUCCUAUUAAAUUU ........................((((((((((((.....)))))))))))).......................(((......)))................................ (-18.60 = -18.27 + -0.33)
| Location | 3,950,074 – 3,950,194 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.00 |
| Mean single sequence MFE | -28.62 |
| Consensus MFE | -19.09 |
| Energy contribution | -18.90 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.67 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.2107 3950074 120 - 6264404 AAAAAGAAUAUGAAUACGAAUGUUUUCUUUCCGCGUUCUGCCGCUAAGUCAUUGAAUUGAAGGCAUAAAAAAACCGGGCGCCAGGCCCGGUUCUUCUGAAAGAGGGAUAAAAAAUAUUUU .................(((((((((..((((...(((((((......(((......))).))))......((((((((.....)))))))).....)))...))))...))))))))). ( -31.50) >psp.2276 4449093 108 - 5928787 AAUUUAAAUAGGAAUAAGAAUGUUUGAGUUCCGCAUCUUGACGCUAAGCGCUUGAAUUACAGGCAUAAAAAAACCGGGCAGGGUGCCCGGUUCUUUA-AAAGAGGGGUA----------- ((((((((((..........))))))))))((.(.((((..........(((((.....)))))...(((.((((((((.....)))))))).))).-.))))).))..----------- ( -30.20) >pss.2360 4638010 106 - 6093698 AAAUUAAAUAGGAAUAAGAAUGUUUGAGUUCCGCAUCUUGACGCUAAGCGCUUGAAUUACAGACAUAAAAAAACCGGACGUGGUGUCCGGUUCUUUA-AAAGAGGGG------------- ...................((((((((((((.((..((((....)))).))..))))).))))))).(((.((((((((.....)))))))).))).-.........------------- ( -24.50) >pf5.2958 5601810 100 - 7074893 AAAAUUAAUCGGAAUAAGAAUGUUUGUGUUCCGCGUUUUGUCUCUAAGCGAUUGAAUUACAGGCAUAAAAAAACCGGACGCCAGGUCCGGUUGUUUGUAA-------------------- ....((((((((((((.((....)).))))))..((((.......)))))))))).(((((((((.......(((((((.....))))))))))))))))-------------------- ( -29.11) >ppk.610 4939207 100 + 6181863 AAAAUUAAUAGGAAUAAGAAUGUUUGUGAACCGCGUUGCAACGCUAACUUGUUGAAUUGCGGGCAUAAAAAAACCGGACACCAGGUCCGGUUCUUGA-AAU------------------- ..............(((((...((((((..(((((...(((((......)))))...))))).))))))...(((((((.....)))))))))))).-...------------------- ( -30.50) >pel.650 4617261 100 + 5888780 AAAUUUAAUCGGAAUAAGAAUGUUUGUGAACCGCGUUAUGGCGCUAACUUAUUGAAUUACAGGCAUAAAAAAACCGGACGCGAGGUCCGGUUCUUCA-AAA------------------- ...........(((.....((((((((((...((((....))))...(.....)..)))))))))).....((((((((.....)))))))).))).-...------------------- ( -25.90) >consensus AAAAUUAAUAGGAAUAAGAAUGUUUGUGUUCCGCGUUUUGACGCUAAGCGAUUGAAUUACAGGCAUAAAAAAACCGGACGCCAGGUCCGGUUCUUUA_AAA___________________ ...................(((((((((....(((......)))(((....)))...))))))))).....((((((((.....))))))))............................ (-19.09 = -18.90 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:13:04 2007