| Sequence ID | pao.466 |
|---|---|
| Location | 831,195 – 831,300 |
| Length | 105 |
| Max. P | 0.524543 |
| Location | 831,195 – 831,300 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 79.96 |
| Mean single sequence MFE | -33.38 |
| Consensus MFE | -22.40 |
| Energy contribution | -22.07 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.466 831195 105 + 6264404 GACGCAUGCUUGGAGGGG-AGAACUUUUGCAAGAAGCCCGAGUCUAUCUUGGCAAGACGAUUCGCUGGGACGCUCGAAGCUCCUCCAGGUUCGAAGAGGAGCUUUC ...((...((((.(((((-....))))).))))..)).(((((...(((..((..........))..))).)))))(((((((((..........))))))))).. ( -34.90) >pel.2458 1306363 100 - 5888780 GAAACUUGCUUGGAGGGG-AGAACUUUUGCGCAAAGCCCGAGUCUAUGUUUGCAAGCCUGAACGAUGGCUGUCGCAACGCUCCUUCGAGUUCACUGAGGAG----- ....((((((((((((((-(((.(((..((.....))..))))))....((((.((((........))))...))))..))))))))))).....)))...----- ( -30.30) >ppk.812 1627163 100 + 6181863 GAAACUUGCUUGGAGGGG-AGAACUUUUGCGCAAAGCCCGAGUCUAUGGUUGCAAGCCUGAACGAUGGCUGAUGCAACGCUCCUUCGAGUUCACUGAGGAG----- ....((((((((((((((-(((.(((..((.....))..))))))...((((((((((........))))..)))))).))))))))))).....)))...----- ( -34.60) >pf5.866 1628036 101 + 7074893 GAAACUUGCUUGGAGGGGGAGAACUUUUGCGAAAAGCCCGAGUCUAUGUUUGCAAGCCUGAUCGUUUAGUGAUGCAAGCCUCCUCCGAGCUUAUCGAGGAG----- .......(((((((((((.(((.(((..((.....))..))))))..(((((((...((((....))))...))))))))))))))))))...........----- ( -35.50) >pfo.768 1536035 101 + 6438405 GAAACUUGCUUGGAGGGGGAGAACUUUUGCGAAAAGCCCGAGUCUAUGUUUGCAAGUCCGGUCGUUUGGUCAUGCAAGCCUCCUCCGAGUUUAUCGAGGAG----- ....((((((((((((((.(((.(((..((.....))..))))))..(((((((.(.((((....)))).).)))))))))))))))))).....)))...----- ( -36.70) >pst.2518 1638815 101 - 6397126 GAAACUUGCUUGAAGGGGGAGAACUUUUGCGAAAAGCCCGAGUCUAUGUUUGCAAGCCUGAACAAUGUCAGUUGCAACACUCCUUCAUGCUUAAUGAGGAG----- .......((.((((((((.(((.(((..((.....))..)))))).((((.((((..((((......)))))))))))))))))))).))...........----- ( -28.30) >consensus GAAACUUGCUUGGAGGGG_AGAACUUUUGCGAAAAGCCCGAGUCUAUGUUUGCAAGCCUGAACGAUGGCUGAUGCAACGCUCCUCCGAGUUCAAUGAGGAG_____ .......(((((((((((.(((.(((..((.....))..))))))...(((((....................))))).)))))))))))................ (-22.40 = -22.07 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:13:02 2007