| Sequence ID | pao.1083 |
|---|---|
| Location | 1,947,728 – 1,947,809 |
| Length | 81 |
| Max. P | 0.988496 |
| Location | 1,947,728 – 1,947,809 |
|---|---|
| Length | 81 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 80.81 |
| Mean single sequence MFE | -31.70 |
| Consensus MFE | -34.33 |
| Energy contribution | -30.23 |
| Covariance contribution | -4.10 |
| Combinations/Pair | 1.48 |
| Mean z-score | -2.04 |
| Structure conservation index | 1.08 |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.988496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1083 1947728 81 + 6264404 GUGGGCGUAGCUCAGUUGGUAGAGCACAGGAUUGUGGCUCCUGGUGUCGUGGGUUCGAUUCCCAUCGUCCACCCCAUAUUU (((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))......... ( -27.90) >pau.1942 2850701 81 - 6537648 GUGGGCGUAGCUCAGUUGGUAGAGCACAGGAUUGUGGCUCCUGGUGUCGUGGGUUCGAUUCCCAUCGUCCACCCCAUAUUU (((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))......... ( -27.90) >pss.2157 1801178 80 - 6093698 GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCAAAUU- (((((((..((((........))))..((((((((....).)))))))(((((.......))))))))))))........- ( -33.60) >ppk.1076 2102961 80 + 6181863 GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCAGUUU- (((((((..((((........))))..((((((((....).)))))))(((((.......))))))))))))........- ( -33.60) >psp.2113 1760269 80 - 5928787 GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCAAAUU- (((((((..((((........))))..((((((((....).)))))))(((((.......))))))))))))........- ( -33.60) >pst.1067 1956429 80 + 6397126 GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCAUAUU- (((((((..((((........))))..((((((((....).)))))))(((((.......))))))))))))........- ( -33.60) >consensus GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCAUAUU_ (((((((..((((........)))).(((((((...))))))).....(((((.......))))))))))))......... (-34.33 = -30.23 + -4.10)
| Location | 1,947,728 – 1,947,809 |
|---|---|
| Length | 81 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 80.81 |
| Mean single sequence MFE | -27.73 |
| Consensus MFE | -29.16 |
| Energy contribution | -25.83 |
| Covariance contribution | -3.32 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.12 |
| Structure conservation index | 1.05 |
| SVM decision value | 2.04 |
| SVM RNA-class probability | 0.986344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>pao.1083 1947728 81 - 6264404 AAAUAUGGGGUGGACGAUGGGAAUCGAACCCACGACACCAGGAGCCACAAUCCUGUGCUCUACCAACUGAGCUACGCCCAC .......(((((..((.((((.......))))))....(((((.......))))).((((........))))..))))).. ( -26.80) >pau.1942 2850701 81 + 6537648 AAAUAUGGGGUGGACGAUGGGAAUCGAACCCACGACACCAGGAGCCACAAUCCUGUGCUCUACCAACUGAGCUACGCCCAC .......(((((..((.((((.......))))))....(((((.......))))).((((........))))..))))).. ( -26.80) >pss.2157 1801178 80 + 6093698 -AAUUUGGAGCGGGAAACGAGACUCGAACUCGCGACCCCGACCUUGGCAAGGUCGUGCUCUACCAACUGAGCUAUUCCCGC -........(((((((..(((.......)))(((((((((....)))...))))))((((........))))..))))))) ( -28.20) >ppk.1076 2102961 80 - 6181863 -AAACUGGAGCGGGAAACGAGACUCGAACUCGCGACCCCGACCUUGGCAAGGUCGUGCUCUACCAACUGAGCUAUUCCCGC -........(((((((..(((.......)))(((((((((....)))...))))))((((........))))..))))))) ( -28.20) >psp.2113 1760269 80 + 5928787 -AAUUUGGAGCGGGAAACGAGACUCGAACUCGCGACCCCGACCUUGGCAAGGUCGUGCUCUACCAACUGAGCUAUUCCCGC -........(((((((..(((.......)))(((((((((....)))...))))))((((........))))..))))))) ( -28.20) >pst.1067 1956429 80 - 6397126 -AAUAUGGAGCGGGAAACGAGACUCGAACUCGCGACCCCGACCUUGGCAAGGUCGUGCUCUACCAACUGAGCUAUUCCCGC -........(((((((..(((.......)))(((((((((....)))...))))))((((........))))..))))))) ( -28.20) >consensus _AAUAUGGAGCGGGAAACGAGACUCGAACUCGCGACCCCGACCUUGGCAAGGUCGUGCUCUACCAACUGAGCUAUUCCCGC .........(((((((.((((.......))))......((((((.....)))))).((((........))))..))))))) (-29.16 = -25.83 + -3.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Jan 18 21:12:55 2007